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def spg_line_search_step_length(current_step_length, delta, f_old, f_new, sigma_one=0.1, sigma_two=0.9): """Return next step length for line search.""" step_length_tmp = (-0.5 * current_step_length ** 2 * delta / (f_new - f_old - current_step_length * delt...
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def samps2ms(samples: float, sr: int) -> float: """samples to milliseconds given a sampling rate""" return (samples / sr) * 1000.0
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import os def get_folder_name(path, prefix=''): """ Look at the current path and change the name of the experiment if it is repeated Args: path (string): folder path prefix (string): prefix to add Returns: string: unique path to save the experiment """ if prefix == '...
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import argparse def get_args(): """! Command line parser for Utterance level classification Leave one speaker out schema pipeline -- Find Best Models""" parser = argparse.ArgumentParser( description='Utterance level classification Leave one ' 'speaker out schema pipeline -- Fin...
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def esOperador(o): """"retorna true si 'o' es un operador""" return o == "+" or o == "-" or o == "/" or o == "*"
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def valid_identity(identity): """Determines whether or not the provided identity is a valid value.""" valid = (identity == "homer") or (identity == "sherlock") return valid
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import argparse def parse_arguments(): """parse_arguments""" parser = argparse.ArgumentParser(description="MindSpore Tensorflow weight transfer") parser.add_argument("--pretrained", default=None, type=str) parser.add_argument("--name", default="imagenet22k", choices=["imagenet22k",]) args = parser...
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import argparse def build_arg_parser(): """ Builds an argparse object to handle command-line arguments passed in. """ parser = argparse.ArgumentParser(description="Loads an ontology file in " + "OBO file format into a Neo4j graph database.") parser.add_argument('-i', '-...
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def get_username() -> str: """ Prompts the user to enter a username and then returns it :return: The username entered by the user """ while True: print("Please enter your username (without spaces)") username = input().strip() if ' ' not in username: return usernam...
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def get_pip_package_name(provider_package_id: str) -> str: """ Returns PIP package name for the package id. :param provider_package_id: id of the package :return: the name of pip package """ return "apache-airflow-providers-" + provider_package_id.replace(".", "-")
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def first(iterable, default=None): """ Returns the first item or a default value >>> first(x for x in [1, 2, 3] if x % 2 == 0) 2 >>> first((x for x in [1, 2, 3] if x > 42), -1) -1 """ return next(iter(iterable), default)
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import random def random_small_number(): """ 随机生成一个小数 :return: 返回小数 """ return random.random()
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def float_to_16(value): """ convert float value into fixed exponent (8) number returns 16 bit integer, as value * 256 """ value = int(round(value*0x100,0)) return value & 0xffff
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import os def get_parent_dir(): """Returns the root directory of the project.""" return os.path.abspath(os.path.join(os.getcwd(), os.pardir))
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def context(): """Return an instance of the JIRA tool context.""" return dict()
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def f(OPL,R): """ Restoration function calculated from optical path length (OPL) and from rational function parameter (R). The rational is multiplied along all optical path. """ x = 1 for ii in range(len(OPL)): x = x * (OPL[ii] + R[ii][2]) / (R[ii][0] * OPL[ii] + R[ii][1]) return x
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def _str_conv(number, rounded=False): """ Convenience tool to convert a number, either float or int into a string. If the int or float is None, returns empty string. >>> print(_str_conv(12.3)) 12.3 >>> print(_str_conv(12.34546, rounded=1)) 12.3 >>> print(_str_conv(None)) <BLANKLINE...
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def label_smoothed_nll_loss(lprobs, target, epsilon: float = 1e-8, ignore_index=None): """Adapted from fairseq Parameters ---------- lprobs Log probabilities of amino acids per position target Target amino acids encoded as integer indices epsilon Smoothing factor between...
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import re def parse_date(regexen, date_str): """ Parse a messy string into a granular date `regexen` is of the form [ (regex, (granularity, groups -> datetime)) ] """ if date_str: for reg, (gran, dater) in regexen: m = re.match(reg, date_str) if m: ...
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import requests def is_referenced(url, id, catalog_info): """Given the url of a resource from the catalog, this function returns True if the resource is referenced by data.gouv.fr False otherwise :param :url: url of a resource in the catalog :type :url: string""" dgf_page = catalog...
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from typing import Dict def get_entity_contents(entity: Dict) -> Dict: """ :param entity: Entity is a dictionary :return: A dict representation of the contents of entity """ return { 'ID': entity.get('id'), 'Name': entity.get('name'), 'EmailAddress': entity.get('email_addre...
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def t68tot90(t68): """Convert from IPTS-68 to ITS-90 temperature scales, as specified in the CF Standard Name information for sea_water_temperature http://cfconventions.org/Data/cf-standard-names/27/build/cf-standard-name-table.html temperatures are in degrees C""" t90 = 0.9...
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def is_insertion(ref, alt): """Is alt an insertion w.r.t. ref? Args: ref: A string of the reference allele. alt: A string of the alternative allele. Returns: True if alt is an insertion w.r.t. ref. """ return len(ref) < len(alt)
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import os def get_testfile_paths(): """ return the necessary paths for the testfile tests Returns ------- str absolute file path to the test file str absolute folder path to the expected output folder """ testfile = os.path.join(os.path.dirname(os.path.dirname(__file_...
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def singleton(cls): """Decorator that provides singleton functionality. >>> @singleton ... class Foo(object): ... pass ... >>> a = Foo() >>> b = Foo() >>> a is b True """ _inst = [None] def decorated(*args, **kwargs): if _inst[0] is None: _inst[...
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def get_choice(options): """Devuelve como entero la opcion seleccionada para el input con mensaje message""" print(options) try: return int(input("Por favor, escoja una opción: ")) except ValueError: return 0
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def _listminus(list1, list2): """ """ return [a for a in list1 if a not in list2]
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def get_station_freqs(df, method='median'): """ apply to df after applying group_by_days and group_by_station """ #df['DATE'] = df.index.get_level_values('DATE') df['DAY'] = [d.dayofweek for d in df.index.get_level_values('DATE')] df['DAYNAME'] = [d.day_name() for d in df.index.get_level_values(...
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import numpy def quantile(data, num_breaks): """ Calculate quantile breaks. Arguments: data -- Array of values to classify. num_breaks -- Number of breaks to perform. """ def scipy_mquantiles(a, prob=list([.25,.5,.75]), alphap=.4, betap=.4, axis=None, limit=()): """ function copi...
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def get_valid_fields(val: int, cs: dict) -> set: """ A value is valid if there's at least one field's interval which contains it. """ return { field for field, intervals in cs.items() if any(map(lambda i: i[0] <= val <= i[1], intervals)) }
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def get_successors(graph): """Returns a dict of all successors of each node.""" d = {} for e in graph.get_edge_list(): src = e.get_source() dst = e.get_destination() if src in d.keys(): d[src].add(dst) else: d[src] = set([dst]) return d
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def route53_scan(assets, record_value, record): """ Scan Route53 """ for i, asset in enumerate(assets): asset_type = asset.get_type() if asset_type == 'EC2' and record_value in (asset.public_ip, asset.private_ip): assets[i].dns_record = record['Name'].replace('\\052', '*') ...
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def to_int(text): """Text to integer.""" try: return int(text) except ValueError: return ''
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def flooding(loss, b): """flooding loss """ return (loss - b).abs() + b
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def nir_mean(msarr,nir_band=7): """ Calculate the mean of the (unmasked) values of the NIR (near infrared) band of an image array. The default `nir_band` value of 7 selects the NIR2 band in WorldView-2 imagery. If you're working with a different type of imagery, you will need figure out the appropri...
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def sizeFromString(sizeStr, relativeSize): """ Converts from a size string to a float size. sizeStr: The string representation of the size. relativeSize: The size to use in case of percentages. """ if not sizeStr: raise Exception("Size not specified") dpi = 96.0 cm = 2.54 if len(sizeStr) > 2 and sizeStr[-2:...
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import re def verify_time_format(time_str): """ This method is to verify time str format, which is in the format of 'hour:minute', both can be either one or two characters. Hour must be greater or equal 0 and smaller than 24, minute must be greater or equal 0 and smaller than 60 :param time...
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def has_space_element(source): """ 判断对象中的元素,如果存在 None 或空字符串,则返回 True, 否则返回 False, 支持字典、列表和元组 :param: * source: (list, set, dict) 需要检查的对象 :return: * result: (bool) 存在 None 或空字符串或空格字符串返回 True, 否则返回 False 举例如下:: print('--- has_space_element demo---') print(has_space_...
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def return_latest_psm_is(df, id_col, file_col, instr_col, psm_col): """ Extracts info on PSM number, search ID and Instrument from the last row in DB """ last_row = df.iloc[-1] search_id = last_row[id_col] instr = last_row[instr_col] psm = last_row[psm_col] psm_string = str(psm) + ' PSMs in ...
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def add_parser_arguments_misc(parser): """ Adds the options that the command line parser will search for, some miscellaneous parameters, like use of gpu, timing, etc. :param parser: the argument parser :return: the same parser, but with the added options. """ parser.add_argument('--use_gpu',...
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import os import json def get_jobs(job_filename): """Reads jobs from a known job file location """ jobs = list() if job_filename and os.path.isfile(job_filename): with open(job_filename, 'r') as input_fd: data = input_fd.read() job_dict = json.loads(data) del dat...
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from typing import List from typing import Set def grouping_is_valid( proposed_grouping: List[Set[str]], past_groups: List[Set[str]], max_intersection_size: int, ) -> bool: """Returns true if no group in the proposed grouping intersects with any past group with intersection size strictly greater t...
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def next_wire_in_dimension(wire1, tile1, wire2, tile2, tiles, x_wires, y_wires, wire_map, wires_in_node): """ next_wire_in_dimension returns true if tile1 and tile2 are in the same row and column, and must be adjcent. """ tile1_info = tiles[tile1] tile2_info = tiles[tile2] ...
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def sampleM(a0, bk, njk, m_cap=20): """produces sample from distribution over M using normalized log probabilities parameterizing a categorical dist.""" raise DeprecationWarning() wts = np.empty((m_cap,)) sum = 0 for m in range(m_cap): wts[m] = gammaln(a0*bk) - gammaln(a0*bk+njk) + log(...
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def or_default(none_or_value, default): """ inputs: none_or_value: variable to test default: value to return if none_or_value is None """ return none_or_value if none_or_value is not None else default
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import re def keyclean(key): """ Default way to clean table headers so they make good dictionary keys. """ clean = re.sub(r'\s+', '_', key.strip()) clean = re.sub(r'[^\w]', '', clean) return clean
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import collections def get_rfactors_for_each(lpin): """ R-FACTORS FOR INTENSITIES OF DATA SET /isilon/users/target/target/Iwata/_proc_ox2r/150415-hirata/1010/06/DS/multi011_1-5/XDS_ASCII_fullres.HKL RESOLUTION R-FACTOR R-FACTOR COMPARED LIMIT observed expected 5.84 60.4% 50.1...
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def value_left(self, right): """ Returns the value of the right type instance to use in an operator method, namely when the method's instance is on the left side of the expression. """ return right.value if isinstance(right, self.__class__) else right
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def get_mid_surface(in_surfaces): """get_mid_surface gives the mid surface when dealing with the 7 different surfaces Args: (list of strings) in_surfaces : List of path to the 7 different surfaces generated by mris_expand Returns: (string) Path to the mid surface """ return in_surf...
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def parse_type(msg_type): """ Parse ROS message field type :param msg_type: ROS field type, ``str`` :returns: base_type, is_array, array_length, ``(str, bool, int)`` :raises: :exc:`ValueError` If *msg_type* cannot be parsed """ if not msg_type: raise ValueError("Invalid empty type") ...
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def echo(text): """Return echo function.""" return text
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def zernike_name(index, framework='Noll'): """ Get the name of the Zernike with input index in input framework (Noll or WSS). :param index: int, Zernike index :param framework: str, 'Noll' or 'WSS' for Zernike ordering framework :return zern_name: str, name of the Zernike in the chosen framework ...
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def xml_string(line, tag, namespace, default=None): """ Get string value from etree element """ try: val = (line.find(namespace + tag).text) except: val = default return val
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def probabilities (X) -> dict: """ This function maps the set of outcomes found in the sequence of events, 'X', to their respective probabilty of occuring in 'X'. The return value is a python dictionary where the keys are the set of outcomes and the values are their associated probabilities.""" # The set of outcomes...
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def select_daily(ds, day_init=15, day_end=21): """ Select lead time days. Args: ds: xarray dataset. day_init (int): first lead day selection. Defaults to 15. day_end (int): last lead day selection. Defaults to 21. Returns: xarray dataset subset based on time...
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def bulk_lookup(license_dict, pkg_list): """Lookup package licenses""" pkg_licenses = {} for pkg in pkg_list: # Failsafe in case the bom file contains incorrect entries if not pkg.get("name") or not pkg.get("version"): continue pkg_key = pkg["name"] + "@" + pkg["version"]...
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def pack_bits(bools): """Pack sequence of bools into bits""" if len(bools) % 8 != 0: raise ValueError("list length must be multiple of 8") bytes_ = [] b = 0 for j, v in enumerate(reversed(bools)): b <<= 1 b |= v if j % 8 == 7: bytes_.append(b) ...
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import json def LoadJSON(json_string): """Loads json object from string, or None. Args: json_string: A string to get object from. Returns: JSON object if the string represents a JSON object, None otherwise. """ try: data = json.loads(json_string) except ValueError: data = None return ...
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def map_aemo_facility_status(facility_status: str) -> str: """ Maps an AEMO facility status to an Opennem facility status """ unit_status = facility_status.lower().strip() if unit_status.startswith("in service"): return "operating" if unit_status.startswith("in commissioning"): ...
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def demand_monthly_ba(tfr_dfs): """A stub transform function.""" return tfr_dfs
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def _SortableApprovalStatusValues(art, fd_list): """Return a list of approval statuses relevant to one UI table column.""" sortable_value_list = [] for fd in fd_list: for av in art.approval_values: if av.approval_id == fd.field_id: # Order approval statuses by life cycle. # NOT_SET == 8 ...
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def load_config_file(config_file): """ Loads the given file into a list of lines :param config_file: file name of the config file :type config_file: str :return: config file as a list (one item per line) as returned by open().readlines() """ with open(config_file, 'r') as f: config_doc...
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import re import requests def get(url: str) -> dict: """ author、audioName、audios """ data = {} headers = { "Accept": "application/json, text/plain, */*", "Accept-Encoding": "gzip, deflate", "Accept-Language": "zh-CN,zh;q=0.9", "Connection": "keep-alive", "Ho...
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from pathlib import Path def check_overwrite(path: str, overwrite: bool = False) -> str: """ Check if a path exists, if so raising a RuntimeError if overwriting is disabled. :param path: Path :param overwrite: Whether to overwrite :return: Path """ if Path(path).is_file() and not overwrit...
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import struct def bytes_to_text(input): """Converts given bytes (latin-1 char + padding)*length to text""" content = struct.unpack((int(len(input)/2))*"sx", input) return "".join([x.decode("latin-1") for x in content]).rstrip("\x00")
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def update_game(game_obj, size, center1, center2): """ Update game state """ new_game_obj = game_obj.copy() if center1 is not None: new_game_obj['rudder1_pos'] = center1 if center2 is not None: new_game_obj['rudder2_pos'] = center2 # Check if hitting corner init_vel = n...
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def mulaw_to_value(mudata): """Convert a mu-law encoded value to linear.""" position = ((mudata & 0xF0) >> 4) + 5 return ((1 << position) | ((mudata & 0xF) << (position - 4)) | (1 << (position - 5))) - 33
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def validate_watch(value): """Validate "watch" parameter.""" if not value: return None if isinstance(value, str): value = [_ for _ in value.split("\n") if _] return value
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import re def test_invalid_patterns(list, pattern): """ Function to facilitate the tests in MyRegExTest class :param list: list with strings of invalid cases :param pattern: a regular expression :return: list with the result of all matches which should be a list of None """ newList = [] ...
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import argparse def args_parse(): """Parse the input args.""" parser = argparse.ArgumentParser(description='Certificate import') parser.add_argument("--cert", default="./kmc/config/crt/sever.cert", type=str, help="The path of certificate file") parser.add_argument("--key", defa...
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def remove_constant_features(sfm): """ Remove features that are constant across all samples """ # boolean matrix of whether x == first column (feature) x_not_equal_to_1st_row = sfm._x != sfm._x[0] non_const_f_bool_ind = x_not_equal_to_1st_row.sum(axis=0) >= 1 return sfm.ind_x(selected_f_inds...
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def _find_ntc_family(guide_id): """Return a String of the NTC family """ guide_id_list = guide_id.split('_') return '_'.join(guide_id_list[0:2])
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def _chr_ord(x): """ This is a private utility function for getBytesIOString to return chr(ord(x)) """ return chr(ord(x))
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def load_glove_vectors(glove_file="/home/yaguang/pretrained_models/glove.6B.50d.txt"): """Load the glove word vectors""" word_vectors = {} with open(glove_file) as f: for line in f: split = line.split() word_vectors[split[0]] = [float(x) for x in split[1:]] return word_ve...
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import math def compute_recommended_batch_size_for_trustworthy_experiments(C: int, H: int, W: int, safety_val: float) -> int: """ Based on inequality with safety_val=s: N' >= s*D' the recommended batch size is, assuming N'=B*H*W and D'=C (so considering neurons as filter, patches as data): ...
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def load_document(filepath): """ Description:Opens and loads the file specified by filepath as a raw txt string; assumes valid text file format. Input: String -> filepath of file from current directory Output: Entire contents of text file as a string """ #assert(filepath.endswith(".txt")), "Function: Load ...
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def readByte (file): """ Read a byte from file. """ return ord (file.read (1))
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def _column_sel_dispatch(columns_to_select, df): # noqa: F811 """ Base function for column selection. Applies only to slices. The start slice value must be a string or None; same goes for the stop slice value. The step slice value should be an integer or None. A slice, if passed correctly i...
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def sdfGetMolBlock(mol): """ sdfGetMolBlock() returns the MOL block of the molecule """ return mol["molblock"]
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def createPhysicalAddressDataframe(userDf): """ This method create PhoneNumber dataframe for CDM :param userDf: person dataframe :type userDf: object """ addressColumns = [ "id as personId","city","country","officeLocation","postalCode","state","streetAddress" ] return userDf.selec...
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from typing import Optional from pathlib import Path import os def is_stem(path: Optional[str]) -> bool: """Check if the given path is a stem.""" if path is None: return False path = path.lower() parent = str(Path(path).parent) if parent == ".": root, ext = os.path.splitext(path...
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import os def get_resource_path(filename: str = "") -> str: """ get the resource path in the resource in the test dir. /path/to/resource/filename """ current = os.path.abspath(__file__) current_path = os.path.dirname(current) resource_dir = os.path.join(current_path, 'resource') return...
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def noop_chew_func(_data, _arg): """ No-op chew function. """ return 0
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def find_middle_snake_less_memory(old_sequence, N, new_sequence, M): """ A variant of the 'find middle snake' function that uses O(min(len(a), len(b))) memory instead of O(len(a) + len(b)) memory. This does not improve the worst-case memory requirement, but it takes the best case memory requirement ...
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from datetime import datetime def set_clock(child, timestamp=None): """Set the device's clock. :param pexpect.spawn child: The connection in a child application object. :param datetime timestamp: A datetime tuple (year, month, day, hour, minute, second). :returns: The updated connection in a child ap...
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def index(request): """Render site index page.""" return {}
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def parse_file(filename): """Parses the file containing the db schema Key Arguments: filename - the file to parse""" f = open(filename, 'r') lines = f.readlines() f.close() db = {} for line in lines: s_line = line.split('\t') if s_line[0] == 'TABLE_CATALOG': ...
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import os import requests def check_token(token) -> bool: """Check ReCaptcha token Args: token Returns: bool """ if os.getenv("CI"): return True url = "https://www.google.com/recaptcha/api/siteverify" secret_key = os.getenv("RECAPTCHA_SECRET_KEY") payload =...
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import argparse def get_commandline_parser(): """it parses commandline arguments.""" parser = argparse.ArgumentParser(description='Toolpath generator.') parser.add_argument('--stl-filepath', help='filpath of stl file.') parser.add_argument('--diameter', help='Diameter of toolbit.') parser.add_argu...
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def uniquify_contacts(contacts): """ Return a sequence of contacts with all duplicates removed. If any duplicate names are found without matching numbers, an exception is raised. """ ctd = {} for ct in contacts: stored_ct = ctd.setdefault(ct.name, ct) if stored_ct.dmrid != ct.dm...
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def optimize_bank_transaction_list(bank_transactions): """Append related objects using select_related and prefetch_related""" return bank_transactions.select_related('block')
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def determine_if_is_hmmdb(infp): """Return True if the given file is an HMM database (generated using hmmpress from the HMMer3 software package), and return False otherwise. """ #if open(infp, 'r').read().startswith('HMMER3/f'): if open(infp, 'r').readline().startswith('HMMER3/f'): return Tr...
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def template_footer(in_template): """Extracts footer from the notebook template. Args: in_template (str): Input notebook template file path. Returns: list: List of lines. """ footer = [] template_lines = [] footer_start_index = 0 with open(in_template) as f...
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def post_step1(records): """Apply whatever extensions we have for GISTEMP step 1, that run after the main step 1. None at present.""" return records
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def Position(context): """Function: <number> position()""" return context.position
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import math def spatial_shift_crop_list(size, images, spatial_shift_pos, boxes=None): """ Perform left, center, or right crop of the given list of images. Args: size (int): size to crop. image (list): ilist of images to perform short side scale. Dimension is `height` x `width` ...
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import argparse def get_input_args(): """ Used to parse the command line arguments in order to predict the flower name and the class probability. Options: Return top KK most likely classes: python predict.py input checkpoint --top_k 3 Use a mapping of categories to real names: python predict.py in...
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import sys import os def IsInteractive(output=False, error=False, heuristic=False): """Determines if the current terminal session is interactive. sys.stdin must be a terminal input stream. Args: output: If True then sys.stdout must also be a terminal output stream. error: If True then sys.stderr must ...
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import os import errno import stat def ismount(path): """ Test whether a path is a mount point. This is code hijacked from C Python 2.6.8, adapted to remove the extra lstat() system call. """ try: s1 = os.lstat(path) except os.error as err: if err.errno == errno.ENOENT: ...
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def write_results(conn, cursor, mag_dict, position_dict): """ Write star truth results to the truth table Parameters ---------- conn is a sqlite3 connection to the database cursor is a sqlite3.conneciton.cursor() object mag_dict is a dict of mags. It is keyed on the pid of the Proces...
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