target stringlengths 20 113k | src_fm stringlengths 11 86.3k | src_fm_fc stringlengths 21 86.4k | src_fm_fc_co stringlengths 30 86.4k | src_fm_fc_ms stringlengths 42 86.8k | src_fm_fc_ms_ff stringlengths 43 86.8k |
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@Test public void testNoHeaderDefaultConfig_badRequest() throws ServletException, IOException { HttpServletRequest mockReq = Mockito.mock(HttpServletRequest.class); Mockito.when(mockReq.getHeader(AtlasCSRFPreventionFilter.HEADER_DEFAULT)).thenReturn(null); Mockito.when(mockReq.getHeader(AtlasCSRFPreventionFilter.HEADER... | public void doFilter(ServletRequest request, ServletResponse response, FilterChain chain) throws IOException, ServletException { final HttpServletRequest httpRequest = (HttpServletRequest) request; final HttpServletResponse httpResponse = (HttpServletResponse) response; AtlasResponseRequestWrapper responseWrapper = new... | AtlasCSRFPreventionFilter implements Filter { public void doFilter(ServletRequest request, ServletResponse response, FilterChain chain) throws IOException, ServletException { final HttpServletRequest httpRequest = (HttpServletRequest) request; final HttpServletResponse httpResponse = (HttpServletResponse) response; Atl... | AtlasCSRFPreventionFilter implements Filter { public void doFilter(ServletRequest request, ServletResponse response, FilterChain chain) throws IOException, ServletException { final HttpServletRequest httpRequest = (HttpServletRequest) request; final HttpServletResponse httpResponse = (HttpServletResponse) response; Atl... | AtlasCSRFPreventionFilter implements Filter { public void doFilter(ServletRequest request, ServletResponse response, FilterChain chain) throws IOException, ServletException { final HttpServletRequest httpRequest = (HttpServletRequest) request; final HttpServletResponse httpResponse = (HttpServletResponse) response; Atl... | AtlasCSRFPreventionFilter implements Filter { public void doFilter(ServletRequest request, ServletResponse response, FilterChain chain) throws IOException, ServletException { final HttpServletRequest httpRequest = (HttpServletRequest) request; final HttpServletResponse httpResponse = (HttpServletResponse) response; Atl... |
@Test public void testClassificationTypeGetNormalizedValue() { assertNull(classificationType.getNormalizedValue(null), "value=" + null); for (Object value : validValues) { if (value == null) { continue; } Object normalizedValue = classificationType.getNormalizedValue(value); assertNotNull(normalizedValue, "value=" + va... | @Override public Object getNormalizedValue(Object obj) { Object ret = null; if (obj != null) { if (isValidValue(obj)) { if (obj instanceof AtlasClassification) { normalizeAttributeValues((AtlasClassification) obj); ret = obj; } else if (obj instanceof Map) { normalizeAttributeValues((Map) obj); ret = obj; } } } return ... | AtlasClassificationType extends AtlasStructType { @Override public Object getNormalizedValue(Object obj) { Object ret = null; if (obj != null) { if (isValidValue(obj)) { if (obj instanceof AtlasClassification) { normalizeAttributeValues((AtlasClassification) obj); ret = obj; } else if (obj instanceof Map) { normalizeAt... | AtlasClassificationType extends AtlasStructType { @Override public Object getNormalizedValue(Object obj) { Object ret = null; if (obj != null) { if (isValidValue(obj)) { if (obj instanceof AtlasClassification) { normalizeAttributeValues((AtlasClassification) obj); ret = obj; } else if (obj instanceof Map) { normalizeAt... | AtlasClassificationType extends AtlasStructType { @Override public Object getNormalizedValue(Object obj) { Object ret = null; if (obj != null) { if (isValidValue(obj)) { if (obj instanceof AtlasClassification) { normalizeAttributeValues((AtlasClassification) obj); ret = obj; } else if (obj instanceof Map) { normalizeAt... | AtlasClassificationType extends AtlasStructType { @Override public Object getNormalizedValue(Object obj) { Object ret = null; if (obj != null) { if (isValidValue(obj)) { if (obj instanceof AtlasClassification) { normalizeAttributeValues((AtlasClassification) obj); ret = obj; } else if (obj instanceof Map) { normalizeAt... |
@Test public void testHeaderPresentDefaultConfig_goodRequest() throws ServletException, IOException { HttpServletRequest mockReq = Mockito.mock(HttpServletRequest.class); Mockito.when(mockReq.getHeader(AtlasCSRFPreventionFilter.HEADER_DEFAULT)).thenReturn("valueUnimportant"); Mockito.when(mockReq.getHeader(AtlasCSRFPre... | public void doFilter(ServletRequest request, ServletResponse response, FilterChain chain) throws IOException, ServletException { final HttpServletRequest httpRequest = (HttpServletRequest) request; final HttpServletResponse httpResponse = (HttpServletResponse) response; AtlasResponseRequestWrapper responseWrapper = new... | AtlasCSRFPreventionFilter implements Filter { public void doFilter(ServletRequest request, ServletResponse response, FilterChain chain) throws IOException, ServletException { final HttpServletRequest httpRequest = (HttpServletRequest) request; final HttpServletResponse httpResponse = (HttpServletResponse) response; Atl... | AtlasCSRFPreventionFilter implements Filter { public void doFilter(ServletRequest request, ServletResponse response, FilterChain chain) throws IOException, ServletException { final HttpServletRequest httpRequest = (HttpServletRequest) request; final HttpServletResponse httpResponse = (HttpServletResponse) response; Atl... | AtlasCSRFPreventionFilter implements Filter { public void doFilter(ServletRequest request, ServletResponse response, FilterChain chain) throws IOException, ServletException { final HttpServletRequest httpRequest = (HttpServletRequest) request; final HttpServletResponse httpResponse = (HttpServletResponse) response; Atl... | AtlasCSRFPreventionFilter implements Filter { public void doFilter(ServletRequest request, ServletResponse response, FilterChain chain) throws IOException, ServletException { final HttpServletRequest httpRequest = (HttpServletRequest) request; final HttpServletResponse httpResponse = (HttpServletResponse) response; Atl... |
@Test public void testHeaderPresentCustomHeaderConfig_goodRequest() throws ServletException, IOException { HttpServletRequest mockReq = Mockito.mock(HttpServletRequest.class); Mockito.when(mockReq.getHeader(X_CUSTOM_HEADER)).thenReturn("valueUnimportant"); HttpServletResponse mockRes = Mockito.mock(HttpServletResponse.... | public void doFilter(ServletRequest request, ServletResponse response, FilterChain chain) throws IOException, ServletException { final HttpServletRequest httpRequest = (HttpServletRequest) request; final HttpServletResponse httpResponse = (HttpServletResponse) response; AtlasResponseRequestWrapper responseWrapper = new... | AtlasCSRFPreventionFilter implements Filter { public void doFilter(ServletRequest request, ServletResponse response, FilterChain chain) throws IOException, ServletException { final HttpServletRequest httpRequest = (HttpServletRequest) request; final HttpServletResponse httpResponse = (HttpServletResponse) response; Atl... | AtlasCSRFPreventionFilter implements Filter { public void doFilter(ServletRequest request, ServletResponse response, FilterChain chain) throws IOException, ServletException { final HttpServletRequest httpRequest = (HttpServletRequest) request; final HttpServletResponse httpResponse = (HttpServletResponse) response; Atl... | AtlasCSRFPreventionFilter implements Filter { public void doFilter(ServletRequest request, ServletResponse response, FilterChain chain) throws IOException, ServletException { final HttpServletRequest httpRequest = (HttpServletRequest) request; final HttpServletResponse httpResponse = (HttpServletResponse) response; Atl... | AtlasCSRFPreventionFilter implements Filter { public void doFilter(ServletRequest request, ServletResponse response, FilterChain chain) throws IOException, ServletException { final HttpServletRequest httpRequest = (HttpServletRequest) request; final HttpServletResponse httpResponse = (HttpServletResponse) response; Atl... |
@Test public void testMissingHeaderWithCustomHeaderConfig_badRequest() throws ServletException, IOException { HttpServletRequest mockReq = Mockito.mock(HttpServletRequest.class); Mockito.when(mockReq.getHeader(X_CUSTOM_HEADER)).thenReturn(null); Mockito.when(mockReq.getHeader(AtlasCSRFPreventionFilter.HEADER_USER_AGENT... | public void doFilter(ServletRequest request, ServletResponse response, FilterChain chain) throws IOException, ServletException { final HttpServletRequest httpRequest = (HttpServletRequest) request; final HttpServletResponse httpResponse = (HttpServletResponse) response; AtlasResponseRequestWrapper responseWrapper = new... | AtlasCSRFPreventionFilter implements Filter { public void doFilter(ServletRequest request, ServletResponse response, FilterChain chain) throws IOException, ServletException { final HttpServletRequest httpRequest = (HttpServletRequest) request; final HttpServletResponse httpResponse = (HttpServletResponse) response; Atl... | AtlasCSRFPreventionFilter implements Filter { public void doFilter(ServletRequest request, ServletResponse response, FilterChain chain) throws IOException, ServletException { final HttpServletRequest httpRequest = (HttpServletRequest) request; final HttpServletResponse httpResponse = (HttpServletResponse) response; Atl... | AtlasCSRFPreventionFilter implements Filter { public void doFilter(ServletRequest request, ServletResponse response, FilterChain chain) throws IOException, ServletException { final HttpServletRequest httpRequest = (HttpServletRequest) request; final HttpServletResponse httpResponse = (HttpServletResponse) response; Atl... | AtlasCSRFPreventionFilter implements Filter { public void doFilter(ServletRequest request, ServletResponse response, FilterChain chain) throws IOException, ServletException { final HttpServletRequest httpRequest = (HttpServletRequest) request; final HttpServletResponse httpResponse = (HttpServletResponse) response; Atl... |
@Test public void testMissingHeaderIgnoreGETMethodConfig_goodRequest() throws ServletException, IOException { HttpServletRequest mockReq = Mockito.mock(HttpServletRequest.class); Mockito.when(mockReq.getHeader(AtlasCSRFPreventionFilter.HEADER_DEFAULT)).thenReturn(null); Mockito.when(mockReq.getMethod()).thenReturn("GET... | public void doFilter(ServletRequest request, ServletResponse response, FilterChain chain) throws IOException, ServletException { final HttpServletRequest httpRequest = (HttpServletRequest) request; final HttpServletResponse httpResponse = (HttpServletResponse) response; AtlasResponseRequestWrapper responseWrapper = new... | AtlasCSRFPreventionFilter implements Filter { public void doFilter(ServletRequest request, ServletResponse response, FilterChain chain) throws IOException, ServletException { final HttpServletRequest httpRequest = (HttpServletRequest) request; final HttpServletResponse httpResponse = (HttpServletResponse) response; Atl... | AtlasCSRFPreventionFilter implements Filter { public void doFilter(ServletRequest request, ServletResponse response, FilterChain chain) throws IOException, ServletException { final HttpServletRequest httpRequest = (HttpServletRequest) request; final HttpServletResponse httpResponse = (HttpServletResponse) response; Atl... | AtlasCSRFPreventionFilter implements Filter { public void doFilter(ServletRequest request, ServletResponse response, FilterChain chain) throws IOException, ServletException { final HttpServletRequest httpRequest = (HttpServletRequest) request; final HttpServletResponse httpResponse = (HttpServletResponse) response; Atl... | AtlasCSRFPreventionFilter implements Filter { public void doFilter(ServletRequest request, ServletResponse response, FilterChain chain) throws IOException, ServletException { final HttpServletRequest httpRequest = (HttpServletRequest) request; final HttpServletResponse httpResponse = (HttpServletResponse) response; Atl... |
@Test public void testMissingHeaderMultipleIgnoreMethodsConfig_badRequest() throws ServletException, IOException { HttpServletRequest mockReq = Mockito.mock(HttpServletRequest.class); Mockito.when(mockReq.getHeader(AtlasCSRFPreventionFilter.HEADER_DEFAULT)) .thenReturn(null); Mockito.when(mockReq.getMethod()).thenRetur... | public void doFilter(ServletRequest request, ServletResponse response, FilterChain chain) throws IOException, ServletException { final HttpServletRequest httpRequest = (HttpServletRequest) request; final HttpServletResponse httpResponse = (HttpServletResponse) response; AtlasResponseRequestWrapper responseWrapper = new... | AtlasCSRFPreventionFilter implements Filter { public void doFilter(ServletRequest request, ServletResponse response, FilterChain chain) throws IOException, ServletException { final HttpServletRequest httpRequest = (HttpServletRequest) request; final HttpServletResponse httpResponse = (HttpServletResponse) response; Atl... | AtlasCSRFPreventionFilter implements Filter { public void doFilter(ServletRequest request, ServletResponse response, FilterChain chain) throws IOException, ServletException { final HttpServletRequest httpRequest = (HttpServletRequest) request; final HttpServletResponse httpResponse = (HttpServletResponse) response; Atl... | AtlasCSRFPreventionFilter implements Filter { public void doFilter(ServletRequest request, ServletResponse response, FilterChain chain) throws IOException, ServletException { final HttpServletRequest httpRequest = (HttpServletRequest) request; final HttpServletResponse httpResponse = (HttpServletResponse) response; Atl... | AtlasCSRFPreventionFilter implements Filter { public void doFilter(ServletRequest request, ServletResponse response, FilterChain chain) throws IOException, ServletException { final HttpServletRequest httpRequest = (HttpServletRequest) request; final HttpServletResponse httpResponse = (HttpServletResponse) response; Atl... |
@Test public void testVerifyExcludedOperations() { AtlasRepositoryConfiguration.resetExcludedOperations(); when(configuration.getStringArray(AtlasRepositoryConfiguration.AUDIT_EXCLUDED_OPERATIONS)).thenReturn(new String[]{"GET:Version", "GET:Ping"}); AuditFilter auditFilter = new AuditFilter(); assertTrue(auditFilter.i... | boolean isOperationExcludedFromAudit(String requestHttpMethod, String requestOperation, Configuration config) { try { return AtlasRepositoryConfiguration.isExcludedFromAudit(config, requestHttpMethod, requestOperation); } catch (AtlasException e) { return false; } } | AuditFilter implements Filter { boolean isOperationExcludedFromAudit(String requestHttpMethod, String requestOperation, Configuration config) { try { return AtlasRepositoryConfiguration.isExcludedFromAudit(config, requestHttpMethod, requestOperation); } catch (AtlasException e) { return false; } } } | AuditFilter implements Filter { boolean isOperationExcludedFromAudit(String requestHttpMethod, String requestOperation, Configuration config) { try { return AtlasRepositoryConfiguration.isExcludedFromAudit(config, requestHttpMethod, requestOperation); } catch (AtlasException e) { return false; } } } | AuditFilter implements Filter { boolean isOperationExcludedFromAudit(String requestHttpMethod, String requestOperation, Configuration config) { try { return AtlasRepositoryConfiguration.isExcludedFromAudit(config, requestHttpMethod, requestOperation); } catch (AtlasException e) { return false; } } @Override void init(... | AuditFilter implements Filter { boolean isOperationExcludedFromAudit(String requestHttpMethod, String requestOperation, Configuration config) { try { return AtlasRepositoryConfiguration.isExcludedFromAudit(config, requestHttpMethod, requestOperation); } catch (AtlasException e) { return false; } } @Override void init(... |
@Test public void testVerifyNotExcludedOperations() { AtlasRepositoryConfiguration.resetExcludedOperations(); when(configuration.getStringArray(AtlasRepositoryConfiguration.AUDIT_EXCLUDED_OPERATIONS)).thenReturn(new String[]{"Version", "Ping"}); AuditFilter auditFilter = new AuditFilter(); assertFalse(auditFilter.isOpe... | boolean isOperationExcludedFromAudit(String requestHttpMethod, String requestOperation, Configuration config) { try { return AtlasRepositoryConfiguration.isExcludedFromAudit(config, requestHttpMethod, requestOperation); } catch (AtlasException e) { return false; } } | AuditFilter implements Filter { boolean isOperationExcludedFromAudit(String requestHttpMethod, String requestOperation, Configuration config) { try { return AtlasRepositoryConfiguration.isExcludedFromAudit(config, requestHttpMethod, requestOperation); } catch (AtlasException e) { return false; } } } | AuditFilter implements Filter { boolean isOperationExcludedFromAudit(String requestHttpMethod, String requestOperation, Configuration config) { try { return AtlasRepositoryConfiguration.isExcludedFromAudit(config, requestHttpMethod, requestOperation); } catch (AtlasException e) { return false; } } } | AuditFilter implements Filter { boolean isOperationExcludedFromAudit(String requestHttpMethod, String requestOperation, Configuration config) { try { return AtlasRepositoryConfiguration.isExcludedFromAudit(config, requestHttpMethod, requestOperation); } catch (AtlasException e) { return false; } } @Override void init(... | AuditFilter implements Filter { boolean isOperationExcludedFromAudit(String requestHttpMethod, String requestOperation, Configuration config) { try { return AtlasRepositoryConfiguration.isExcludedFromAudit(config, requestHttpMethod, requestOperation); } catch (AtlasException e) { return false; } } @Override void init(... |
@Test public void testAudit() throws IOException, ServletException { AtlasRepositoryConfiguration.resetExcludedOperations(); when(servletRequest.getRequestURL()).thenReturn(new StringBuffer("api/atlas/types")); when(servletRequest.getMethod()).thenReturn("GET"); AuditFilter auditFilter = new AuditFilter(); auditFilter.... | public static void audit(AuditLog auditLog) { if (AUDIT_LOG.isInfoEnabled() && auditLog != null) { AUDIT_LOG.info(auditLog.toString()); } } | AuditFilter implements Filter { public static void audit(AuditLog auditLog) { if (AUDIT_LOG.isInfoEnabled() && auditLog != null) { AUDIT_LOG.info(auditLog.toString()); } } } | AuditFilter implements Filter { public static void audit(AuditLog auditLog) { if (AUDIT_LOG.isInfoEnabled() && auditLog != null) { AUDIT_LOG.info(auditLog.toString()); } } } | AuditFilter implements Filter { public static void audit(AuditLog auditLog) { if (AUDIT_LOG.isInfoEnabled() && auditLog != null) { AUDIT_LOG.info(auditLog.toString()); } } @Override void init(FilterConfig filterConfig); @Override void doFilter(ServletRequest request, ServletResponse response, FilterChain filterChain);... | AuditFilter implements Filter { public static void audit(AuditLog auditLog) { if (AUDIT_LOG.isInfoEnabled() && auditLog != null) { AUDIT_LOG.info(auditLog.toString()); } } @Override void init(FilterConfig filterConfig); @Override void doFilter(ServletRequest request, ServletResponse response, FilterChain filterChain);... |
@Test public void testAuditWithExcludedOperation() throws IOException, ServletException { AtlasRepositoryConfiguration.resetExcludedOperations(); when(configuration.getStringArray(AtlasRepositoryConfiguration.AUDIT_EXCLUDED_OPERATIONS)).thenReturn(new String[]{"GET:Version", "GET:Ping"}); when(servletRequest.getRequest... | @Override public void doFilter(ServletRequest request, ServletResponse response, FilterChain filterChain) throws IOException, ServletException { final long startTime = System.currentTimeMillis(); final Date requestTime = new Date(); final HttpServletRequest httpRequest = (HttpServletRequest) request; final HttpServletR... | AuditFilter implements Filter { @Override public void doFilter(ServletRequest request, ServletResponse response, FilterChain filterChain) throws IOException, ServletException { final long startTime = System.currentTimeMillis(); final Date requestTime = new Date(); final HttpServletRequest httpRequest = (HttpServletRequ... | AuditFilter implements Filter { @Override public void doFilter(ServletRequest request, ServletResponse response, FilterChain filterChain) throws IOException, ServletException { final long startTime = System.currentTimeMillis(); final Date requestTime = new Date(); final HttpServletRequest httpRequest = (HttpServletRequ... | AuditFilter implements Filter { @Override public void doFilter(ServletRequest request, ServletResponse response, FilterChain filterChain) throws IOException, ServletException { final long startTime = System.currentTimeMillis(); final Date requestTime = new Date(); final HttpServletRequest httpRequest = (HttpServletRequ... | AuditFilter implements Filter { @Override public void doFilter(ServletRequest request, ServletResponse response, FilterChain filterChain) throws IOException, ServletException { final long startTime = System.currentTimeMillis(); final Date requestTime = new Date(); final HttpServletRequest httpRequest = (HttpServletRequ... |
@Test public void testAuditWithExcludedOperationInIncorrectFormat() throws IOException, ServletException { AtlasRepositoryConfiguration.resetExcludedOperations(); when(configuration.getStringArray(AtlasRepositoryConfiguration.AUDIT_EXCLUDED_OPERATIONS)).thenReturn(new String[]{"Version", "Ping"}); when(servletRequest.g... | @Override public void doFilter(ServletRequest request, ServletResponse response, FilterChain filterChain) throws IOException, ServletException { final long startTime = System.currentTimeMillis(); final Date requestTime = new Date(); final HttpServletRequest httpRequest = (HttpServletRequest) request; final HttpServletR... | AuditFilter implements Filter { @Override public void doFilter(ServletRequest request, ServletResponse response, FilterChain filterChain) throws IOException, ServletException { final long startTime = System.currentTimeMillis(); final Date requestTime = new Date(); final HttpServletRequest httpRequest = (HttpServletRequ... | AuditFilter implements Filter { @Override public void doFilter(ServletRequest request, ServletResponse response, FilterChain filterChain) throws IOException, ServletException { final long startTime = System.currentTimeMillis(); final Date requestTime = new Date(); final HttpServletRequest httpRequest = (HttpServletRequ... | AuditFilter implements Filter { @Override public void doFilter(ServletRequest request, ServletResponse response, FilterChain filterChain) throws IOException, ServletException { final long startTime = System.currentTimeMillis(); final Date requestTime = new Date(); final HttpServletRequest httpRequest = (HttpServletRequ... | AuditFilter implements Filter { @Override public void doFilter(ServletRequest request, ServletResponse response, FilterChain filterChain) throws IOException, ServletException { final long startTime = System.currentTimeMillis(); final Date requestTime = new Date(); final HttpServletRequest httpRequest = (HttpServletRequ... |
@Test public void testClassificationTypeValidateValue() { List<String> messages = new ArrayList<>(); for (Object value : validValues) { assertTrue(classificationType.validateValue(value, "testObj", messages)); assertEquals(messages.size(), 0, "value=" + value); } for (Object value : invalidValues) { assertFalse(classif... | @Override public boolean validateValue(Object obj, String objName, List<String> messages) { boolean ret = true; if (obj != null) { for (AtlasClassificationType superType : superTypes) { ret = superType.validateValue(obj, objName, messages) && ret; } ret = validateTimeBoundaries(obj, messages) && ret; ret = super.valida... | AtlasClassificationType extends AtlasStructType { @Override public boolean validateValue(Object obj, String objName, List<String> messages) { boolean ret = true; if (obj != null) { for (AtlasClassificationType superType : superTypes) { ret = superType.validateValue(obj, objName, messages) && ret; } ret = validateTimeBo... | AtlasClassificationType extends AtlasStructType { @Override public boolean validateValue(Object obj, String objName, List<String> messages) { boolean ret = true; if (obj != null) { for (AtlasClassificationType superType : superTypes) { ret = superType.validateValue(obj, objName, messages) && ret; } ret = validateTimeBo... | AtlasClassificationType extends AtlasStructType { @Override public boolean validateValue(Object obj, String objName, List<String> messages) { boolean ret = true; if (obj != null) { for (AtlasClassificationType superType : superTypes) { ret = superType.validateValue(obj, objName, messages) && ret; } ret = validateTimeBo... | AtlasClassificationType extends AtlasStructType { @Override public boolean validateValue(Object obj, String objName, List<String> messages) { boolean ret = true; if (obj != null) { for (AtlasClassificationType superType : superTypes) { ret = superType.validateValue(obj, objName, messages) && ret; } ret = validateTimeBo... |
@Test public void testNullConfig() { AtlasRepositoryConfiguration.resetExcludedOperations(); AuditFilter auditFilter = new AuditFilter(); assertFalse(auditFilter.isOperationExcludedFromAudit("GET", "Version", null)); } | boolean isOperationExcludedFromAudit(String requestHttpMethod, String requestOperation, Configuration config) { try { return AtlasRepositoryConfiguration.isExcludedFromAudit(config, requestHttpMethod, requestOperation); } catch (AtlasException e) { return false; } } | AuditFilter implements Filter { boolean isOperationExcludedFromAudit(String requestHttpMethod, String requestOperation, Configuration config) { try { return AtlasRepositoryConfiguration.isExcludedFromAudit(config, requestHttpMethod, requestOperation); } catch (AtlasException e) { return false; } } } | AuditFilter implements Filter { boolean isOperationExcludedFromAudit(String requestHttpMethod, String requestOperation, Configuration config) { try { return AtlasRepositoryConfiguration.isExcludedFromAudit(config, requestHttpMethod, requestOperation); } catch (AtlasException e) { return false; } } } | AuditFilter implements Filter { boolean isOperationExcludedFromAudit(String requestHttpMethod, String requestOperation, Configuration config) { try { return AtlasRepositoryConfiguration.isExcludedFromAudit(config, requestHttpMethod, requestOperation); } catch (AtlasException e) { return false; } } @Override void init(... | AuditFilter implements Filter { boolean isOperationExcludedFromAudit(String requestHttpMethod, String requestOperation, Configuration config) { try { return AtlasRepositoryConfiguration.isExcludedFromAudit(config, requestHttpMethod, requestOperation); } catch (AtlasException e) { return false; } } @Override void init(... |
@Test(priority = -1) public void searchByALLTag() throws AtlasBaseException { SearchParameters params = new SearchParameters(); params.setClassification(ALL_CLASSIFICATION_TYPES); params.setLimit(20); SearchContext context = new SearchContext(params, typeRegistry, graph, indexer.getVertexIndexKeys()); ClassificationSea... | @Override public List<AtlasVertex> execute() { if (LOG.isDebugEnabled()) { LOG.debug("==> ClassificationSearchProcessor.execute({})", context); } List<AtlasVertex> ret = new ArrayList<>(); AtlasPerfTracer perf = null; if (AtlasPerfTracer.isPerfTraceEnabled(PERF_LOG)) { perf = AtlasPerfTracer.getPerfTracer(PERF_LOG, "Cl... | ClassificationSearchProcessor extends SearchProcessor { @Override public List<AtlasVertex> execute() { if (LOG.isDebugEnabled()) { LOG.debug("==> ClassificationSearchProcessor.execute({})", context); } List<AtlasVertex> ret = new ArrayList<>(); AtlasPerfTracer perf = null; if (AtlasPerfTracer.isPerfTraceEnabled(PERF_LO... | ClassificationSearchProcessor extends SearchProcessor { @Override public List<AtlasVertex> execute() { if (LOG.isDebugEnabled()) { LOG.debug("==> ClassificationSearchProcessor.execute({})", context); } List<AtlasVertex> ret = new ArrayList<>(); AtlasPerfTracer perf = null; if (AtlasPerfTracer.isPerfTraceEnabled(PERF_LO... | ClassificationSearchProcessor extends SearchProcessor { @Override public List<AtlasVertex> execute() { if (LOG.isDebugEnabled()) { LOG.debug("==> ClassificationSearchProcessor.execute({})", context); } List<AtlasVertex> ret = new ArrayList<>(); AtlasPerfTracer perf = null; if (AtlasPerfTracer.isPerfTraceEnabled(PERF_LO... | ClassificationSearchProcessor extends SearchProcessor { @Override public List<AtlasVertex> execute() { if (LOG.isDebugEnabled()) { LOG.debug("==> ClassificationSearchProcessor.execute({})", context); } List<AtlasVertex> ret = new ArrayList<>(); AtlasPerfTracer perf = null; if (AtlasPerfTracer.isPerfTraceEnabled(PERF_LO... |
@Test public void searchByALLTagAndIndexSysFilters() throws AtlasBaseException { SearchParameters params = new SearchParameters(); params.setClassification(ALL_CLASSIFICATION_TYPES); FilterCriteria filterCriteria = getSingleFilterCondition("__timestamp", Operator.LT, String.valueOf(System.currentTimeMillis())); params.... | @Override public List<AtlasVertex> execute() { if (LOG.isDebugEnabled()) { LOG.debug("==> ClassificationSearchProcessor.execute({})", context); } List<AtlasVertex> ret = new ArrayList<>(); AtlasPerfTracer perf = null; if (AtlasPerfTracer.isPerfTraceEnabled(PERF_LOG)) { perf = AtlasPerfTracer.getPerfTracer(PERF_LOG, "Cl... | ClassificationSearchProcessor extends SearchProcessor { @Override public List<AtlasVertex> execute() { if (LOG.isDebugEnabled()) { LOG.debug("==> ClassificationSearchProcessor.execute({})", context); } List<AtlasVertex> ret = new ArrayList<>(); AtlasPerfTracer perf = null; if (AtlasPerfTracer.isPerfTraceEnabled(PERF_LO... | ClassificationSearchProcessor extends SearchProcessor { @Override public List<AtlasVertex> execute() { if (LOG.isDebugEnabled()) { LOG.debug("==> ClassificationSearchProcessor.execute({})", context); } List<AtlasVertex> ret = new ArrayList<>(); AtlasPerfTracer perf = null; if (AtlasPerfTracer.isPerfTraceEnabled(PERF_LO... | ClassificationSearchProcessor extends SearchProcessor { @Override public List<AtlasVertex> execute() { if (LOG.isDebugEnabled()) { LOG.debug("==> ClassificationSearchProcessor.execute({})", context); } List<AtlasVertex> ret = new ArrayList<>(); AtlasPerfTracer perf = null; if (AtlasPerfTracer.isPerfTraceEnabled(PERF_LO... | ClassificationSearchProcessor extends SearchProcessor { @Override public List<AtlasVertex> execute() { if (LOG.isDebugEnabled()) { LOG.debug("==> ClassificationSearchProcessor.execute({})", context); } List<AtlasVertex> ret = new ArrayList<>(); AtlasPerfTracer perf = null; if (AtlasPerfTracer.isPerfTraceEnabled(PERF_LO... |
@Test public void searchByALLTagAndIndexSysFiltersToTestLimit() throws AtlasBaseException { SearchParameters params = new SearchParameters(); params.setClassification(ALL_CLASSIFICATION_TYPES); FilterCriteria filterCriteria = getSingleFilterCondition("__timestamp", Operator.LT, String.valueOf(System.currentTimeMillis()... | @Override public List<AtlasVertex> execute() { if (LOG.isDebugEnabled()) { LOG.debug("==> ClassificationSearchProcessor.execute({})", context); } List<AtlasVertex> ret = new ArrayList<>(); AtlasPerfTracer perf = null; if (AtlasPerfTracer.isPerfTraceEnabled(PERF_LOG)) { perf = AtlasPerfTracer.getPerfTracer(PERF_LOG, "Cl... | ClassificationSearchProcessor extends SearchProcessor { @Override public List<AtlasVertex> execute() { if (LOG.isDebugEnabled()) { LOG.debug("==> ClassificationSearchProcessor.execute({})", context); } List<AtlasVertex> ret = new ArrayList<>(); AtlasPerfTracer perf = null; if (AtlasPerfTracer.isPerfTraceEnabled(PERF_LO... | ClassificationSearchProcessor extends SearchProcessor { @Override public List<AtlasVertex> execute() { if (LOG.isDebugEnabled()) { LOG.debug("==> ClassificationSearchProcessor.execute({})", context); } List<AtlasVertex> ret = new ArrayList<>(); AtlasPerfTracer perf = null; if (AtlasPerfTracer.isPerfTraceEnabled(PERF_LO... | ClassificationSearchProcessor extends SearchProcessor { @Override public List<AtlasVertex> execute() { if (LOG.isDebugEnabled()) { LOG.debug("==> ClassificationSearchProcessor.execute({})", context); } List<AtlasVertex> ret = new ArrayList<>(); AtlasPerfTracer perf = null; if (AtlasPerfTracer.isPerfTraceEnabled(PERF_LO... | ClassificationSearchProcessor extends SearchProcessor { @Override public List<AtlasVertex> execute() { if (LOG.isDebugEnabled()) { LOG.debug("==> ClassificationSearchProcessor.execute({})", context); } List<AtlasVertex> ret = new ArrayList<>(); AtlasPerfTracer perf = null; if (AtlasPerfTracer.isPerfTraceEnabled(PERF_LO... |
@Test public void testClassificationTimebounderTimeZone() { assertTrue(isValidTimeZone("IST")); assertTrue(isValidTimeZone("JST")); assertTrue(isValidTimeZone("UTC")); assertTrue(isValidTimeZone("GMT")); assertTrue(isValidTimeZone("GMT+0")); assertTrue(isValidTimeZone("GMT-0")); assertTrue(isValidTimeZone("GMT+9:00"));... | public static boolean isValidTimeZone(final String timeZone) { final String DEFAULT_GMT_TIMEZONE = "GMT"; if (timeZone.equals(DEFAULT_GMT_TIMEZONE)) { return true; } else { String id = TimeZone.getTimeZone(timeZone).getID(); if (!id.equals(DEFAULT_GMT_TIMEZONE)) { return true; } } return false; } | AtlasClassificationType extends AtlasStructType { public static boolean isValidTimeZone(final String timeZone) { final String DEFAULT_GMT_TIMEZONE = "GMT"; if (timeZone.equals(DEFAULT_GMT_TIMEZONE)) { return true; } else { String id = TimeZone.getTimeZone(timeZone).getID(); if (!id.equals(DEFAULT_GMT_TIMEZONE)) { retur... | AtlasClassificationType extends AtlasStructType { public static boolean isValidTimeZone(final String timeZone) { final String DEFAULT_GMT_TIMEZONE = "GMT"; if (timeZone.equals(DEFAULT_GMT_TIMEZONE)) { return true; } else { String id = TimeZone.getTimeZone(timeZone).getID(); if (!id.equals(DEFAULT_GMT_TIMEZONE)) { retur... | AtlasClassificationType extends AtlasStructType { public static boolean isValidTimeZone(final String timeZone) { final String DEFAULT_GMT_TIMEZONE = "GMT"; if (timeZone.equals(DEFAULT_GMT_TIMEZONE)) { return true; } else { String id = TimeZone.getTimeZone(timeZone).getID(); if (!id.equals(DEFAULT_GMT_TIMEZONE)) { retur... | AtlasClassificationType extends AtlasStructType { public static boolean isValidTimeZone(final String timeZone) { final String DEFAULT_GMT_TIMEZONE = "GMT"; if (timeZone.equals(DEFAULT_GMT_TIMEZONE)) { return true; } else { String id = TimeZone.getTimeZone(timeZone).getID(); if (!id.equals(DEFAULT_GMT_TIMEZONE)) { retur... |
@Test public void searchByTag() throws AtlasBaseException { SearchParameters params = new SearchParameters(); params.setClassification(DIMENSION_CLASSIFICATION); params.setLimit(20); SearchContext context = new SearchContext(params, typeRegistry, graph, indexer.getVertexIndexKeys()); ClassificationSearchProcessor proce... | @Override public List<AtlasVertex> execute() { if (LOG.isDebugEnabled()) { LOG.debug("==> ClassificationSearchProcessor.execute({})", context); } List<AtlasVertex> ret = new ArrayList<>(); AtlasPerfTracer perf = null; if (AtlasPerfTracer.isPerfTraceEnabled(PERF_LOG)) { perf = AtlasPerfTracer.getPerfTracer(PERF_LOG, "Cl... | ClassificationSearchProcessor extends SearchProcessor { @Override public List<AtlasVertex> execute() { if (LOG.isDebugEnabled()) { LOG.debug("==> ClassificationSearchProcessor.execute({})", context); } List<AtlasVertex> ret = new ArrayList<>(); AtlasPerfTracer perf = null; if (AtlasPerfTracer.isPerfTraceEnabled(PERF_LO... | ClassificationSearchProcessor extends SearchProcessor { @Override public List<AtlasVertex> execute() { if (LOG.isDebugEnabled()) { LOG.debug("==> ClassificationSearchProcessor.execute({})", context); } List<AtlasVertex> ret = new ArrayList<>(); AtlasPerfTracer perf = null; if (AtlasPerfTracer.isPerfTraceEnabled(PERF_LO... | ClassificationSearchProcessor extends SearchProcessor { @Override public List<AtlasVertex> execute() { if (LOG.isDebugEnabled()) { LOG.debug("==> ClassificationSearchProcessor.execute({})", context); } List<AtlasVertex> ret = new ArrayList<>(); AtlasPerfTracer perf = null; if (AtlasPerfTracer.isPerfTraceEnabled(PERF_LO... | ClassificationSearchProcessor extends SearchProcessor { @Override public List<AtlasVertex> execute() { if (LOG.isDebugEnabled()) { LOG.debug("==> ClassificationSearchProcessor.execute({})", context); } List<AtlasVertex> ret = new ArrayList<>(); AtlasPerfTracer perf = null; if (AtlasPerfTracer.isPerfTraceEnabled(PERF_LO... |
@Test public void searchByTagAndTagFilters() throws AtlasBaseException { SearchParameters params = new SearchParameters(); params.setClassification(DIMENSIONAL_CLASSIFICATION); FilterCriteria filterCriteria = getSingleFilterCondition("attr1", Operator.EQ, "Test"); params.setTagFilters(filterCriteria); params.setLimit(2... | @Override public List<AtlasVertex> execute() { if (LOG.isDebugEnabled()) { LOG.debug("==> ClassificationSearchProcessor.execute({})", context); } List<AtlasVertex> ret = new ArrayList<>(); AtlasPerfTracer perf = null; if (AtlasPerfTracer.isPerfTraceEnabled(PERF_LOG)) { perf = AtlasPerfTracer.getPerfTracer(PERF_LOG, "Cl... | ClassificationSearchProcessor extends SearchProcessor { @Override public List<AtlasVertex> execute() { if (LOG.isDebugEnabled()) { LOG.debug("==> ClassificationSearchProcessor.execute({})", context); } List<AtlasVertex> ret = new ArrayList<>(); AtlasPerfTracer perf = null; if (AtlasPerfTracer.isPerfTraceEnabled(PERF_LO... | ClassificationSearchProcessor extends SearchProcessor { @Override public List<AtlasVertex> execute() { if (LOG.isDebugEnabled()) { LOG.debug("==> ClassificationSearchProcessor.execute({})", context); } List<AtlasVertex> ret = new ArrayList<>(); AtlasPerfTracer perf = null; if (AtlasPerfTracer.isPerfTraceEnabled(PERF_LO... | ClassificationSearchProcessor extends SearchProcessor { @Override public List<AtlasVertex> execute() { if (LOG.isDebugEnabled()) { LOG.debug("==> ClassificationSearchProcessor.execute({})", context); } List<AtlasVertex> ret = new ArrayList<>(); AtlasPerfTracer perf = null; if (AtlasPerfTracer.isPerfTraceEnabled(PERF_LO... | ClassificationSearchProcessor extends SearchProcessor { @Override public List<AtlasVertex> execute() { if (LOG.isDebugEnabled()) { LOG.debug("==> ClassificationSearchProcessor.execute({})", context); } List<AtlasVertex> ret = new ArrayList<>(); AtlasPerfTracer perf = null; if (AtlasPerfTracer.isPerfTraceEnabled(PERF_LO... |
@Test public void searchByTagAndIndexSysFilters() throws AtlasBaseException { SearchParameters params = new SearchParameters(); params.setClassification(DIMENSION_CLASSIFICATION); FilterCriteria filterCriteria = getSingleFilterCondition("__timestamp", Operator.LT, String.valueOf(System.currentTimeMillis())); params.set... | @Override public List<AtlasVertex> execute() { if (LOG.isDebugEnabled()) { LOG.debug("==> ClassificationSearchProcessor.execute({})", context); } List<AtlasVertex> ret = new ArrayList<>(); AtlasPerfTracer perf = null; if (AtlasPerfTracer.isPerfTraceEnabled(PERF_LOG)) { perf = AtlasPerfTracer.getPerfTracer(PERF_LOG, "Cl... | ClassificationSearchProcessor extends SearchProcessor { @Override public List<AtlasVertex> execute() { if (LOG.isDebugEnabled()) { LOG.debug("==> ClassificationSearchProcessor.execute({})", context); } List<AtlasVertex> ret = new ArrayList<>(); AtlasPerfTracer perf = null; if (AtlasPerfTracer.isPerfTraceEnabled(PERF_LO... | ClassificationSearchProcessor extends SearchProcessor { @Override public List<AtlasVertex> execute() { if (LOG.isDebugEnabled()) { LOG.debug("==> ClassificationSearchProcessor.execute({})", context); } List<AtlasVertex> ret = new ArrayList<>(); AtlasPerfTracer perf = null; if (AtlasPerfTracer.isPerfTraceEnabled(PERF_LO... | ClassificationSearchProcessor extends SearchProcessor { @Override public List<AtlasVertex> execute() { if (LOG.isDebugEnabled()) { LOG.debug("==> ClassificationSearchProcessor.execute({})", context); } List<AtlasVertex> ret = new ArrayList<>(); AtlasPerfTracer perf = null; if (AtlasPerfTracer.isPerfTraceEnabled(PERF_LO... | ClassificationSearchProcessor extends SearchProcessor { @Override public List<AtlasVertex> execute() { if (LOG.isDebugEnabled()) { LOG.debug("==> ClassificationSearchProcessor.execute({})", context); } List<AtlasVertex> ret = new ArrayList<>(); AtlasPerfTracer perf = null; if (AtlasPerfTracer.isPerfTraceEnabled(PERF_LO... |
@Test public void searchByWildcardTag() throws AtlasBaseException { SearchParameters params = new SearchParameters(); params.setClassification("Dimension*"); params.setLimit(20); SearchContext context = new SearchContext(params, typeRegistry, graph, indexer.getVertexIndexKeys()); ClassificationSearchProcessor processor... | @Override public List<AtlasVertex> execute() { if (LOG.isDebugEnabled()) { LOG.debug("==> ClassificationSearchProcessor.execute({})", context); } List<AtlasVertex> ret = new ArrayList<>(); AtlasPerfTracer perf = null; if (AtlasPerfTracer.isPerfTraceEnabled(PERF_LOG)) { perf = AtlasPerfTracer.getPerfTracer(PERF_LOG, "Cl... | ClassificationSearchProcessor extends SearchProcessor { @Override public List<AtlasVertex> execute() { if (LOG.isDebugEnabled()) { LOG.debug("==> ClassificationSearchProcessor.execute({})", context); } List<AtlasVertex> ret = new ArrayList<>(); AtlasPerfTracer perf = null; if (AtlasPerfTracer.isPerfTraceEnabled(PERF_LO... | ClassificationSearchProcessor extends SearchProcessor { @Override public List<AtlasVertex> execute() { if (LOG.isDebugEnabled()) { LOG.debug("==> ClassificationSearchProcessor.execute({})", context); } List<AtlasVertex> ret = new ArrayList<>(); AtlasPerfTracer perf = null; if (AtlasPerfTracer.isPerfTraceEnabled(PERF_LO... | ClassificationSearchProcessor extends SearchProcessor { @Override public List<AtlasVertex> execute() { if (LOG.isDebugEnabled()) { LOG.debug("==> ClassificationSearchProcessor.execute({})", context); } List<AtlasVertex> ret = new ArrayList<>(); AtlasPerfTracer perf = null; if (AtlasPerfTracer.isPerfTraceEnabled(PERF_LO... | ClassificationSearchProcessor extends SearchProcessor { @Override public List<AtlasVertex> execute() { if (LOG.isDebugEnabled()) { LOG.debug("==> ClassificationSearchProcessor.execute({})", context); } List<AtlasVertex> ret = new ArrayList<>(); AtlasPerfTracer perf = null; if (AtlasPerfTracer.isPerfTraceEnabled(PERF_LO... |
@Test public void searchByALLWildcardTag() throws AtlasBaseException { SearchParameters params = new SearchParameters(); params.setClassification("*"); params.setLimit(20); SearchContext context = new SearchContext(params, typeRegistry, graph, indexer.getVertexIndexKeys()); ClassificationSearchProcessor processor = new... | @Override public List<AtlasVertex> execute() { if (LOG.isDebugEnabled()) { LOG.debug("==> ClassificationSearchProcessor.execute({})", context); } List<AtlasVertex> ret = new ArrayList<>(); AtlasPerfTracer perf = null; if (AtlasPerfTracer.isPerfTraceEnabled(PERF_LOG)) { perf = AtlasPerfTracer.getPerfTracer(PERF_LOG, "Cl... | ClassificationSearchProcessor extends SearchProcessor { @Override public List<AtlasVertex> execute() { if (LOG.isDebugEnabled()) { LOG.debug("==> ClassificationSearchProcessor.execute({})", context); } List<AtlasVertex> ret = new ArrayList<>(); AtlasPerfTracer perf = null; if (AtlasPerfTracer.isPerfTraceEnabled(PERF_LO... | ClassificationSearchProcessor extends SearchProcessor { @Override public List<AtlasVertex> execute() { if (LOG.isDebugEnabled()) { LOG.debug("==> ClassificationSearchProcessor.execute({})", context); } List<AtlasVertex> ret = new ArrayList<>(); AtlasPerfTracer perf = null; if (AtlasPerfTracer.isPerfTraceEnabled(PERF_LO... | ClassificationSearchProcessor extends SearchProcessor { @Override public List<AtlasVertex> execute() { if (LOG.isDebugEnabled()) { LOG.debug("==> ClassificationSearchProcessor.execute({})", context); } List<AtlasVertex> ret = new ArrayList<>(); AtlasPerfTracer perf = null; if (AtlasPerfTracer.isPerfTraceEnabled(PERF_LO... | ClassificationSearchProcessor extends SearchProcessor { @Override public List<AtlasVertex> execute() { if (LOG.isDebugEnabled()) { LOG.debug("==> ClassificationSearchProcessor.execute({})", context); } List<AtlasVertex> ret = new ArrayList<>(); AtlasPerfTracer perf = null; if (AtlasPerfTracer.isPerfTraceEnabled(PERF_LO... |
@Test public void searchWithNotContains() throws AtlasBaseException { SearchParameters params = new SearchParameters(); params.setClassification(DIMENSIONAL_CLASSIFICATION); FilterCriteria filterCriteria = getSingleFilterCondition("attr1", Operator.NOT_CONTAINS, "Test"); params.setTagFilters(filterCriteria); params.set... | @Override public List<AtlasVertex> execute() { if (LOG.isDebugEnabled()) { LOG.debug("==> ClassificationSearchProcessor.execute({})", context); } List<AtlasVertex> ret = new ArrayList<>(); AtlasPerfTracer perf = null; if (AtlasPerfTracer.isPerfTraceEnabled(PERF_LOG)) { perf = AtlasPerfTracer.getPerfTracer(PERF_LOG, "Cl... | ClassificationSearchProcessor extends SearchProcessor { @Override public List<AtlasVertex> execute() { if (LOG.isDebugEnabled()) { LOG.debug("==> ClassificationSearchProcessor.execute({})", context); } List<AtlasVertex> ret = new ArrayList<>(); AtlasPerfTracer perf = null; if (AtlasPerfTracer.isPerfTraceEnabled(PERF_LO... | ClassificationSearchProcessor extends SearchProcessor { @Override public List<AtlasVertex> execute() { if (LOG.isDebugEnabled()) { LOG.debug("==> ClassificationSearchProcessor.execute({})", context); } List<AtlasVertex> ret = new ArrayList<>(); AtlasPerfTracer perf = null; if (AtlasPerfTracer.isPerfTraceEnabled(PERF_LO... | ClassificationSearchProcessor extends SearchProcessor { @Override public List<AtlasVertex> execute() { if (LOG.isDebugEnabled()) { LOG.debug("==> ClassificationSearchProcessor.execute({})", context); } List<AtlasVertex> ret = new ArrayList<>(); AtlasPerfTracer perf = null; if (AtlasPerfTracer.isPerfTraceEnabled(PERF_LO... | ClassificationSearchProcessor extends SearchProcessor { @Override public List<AtlasVertex> execute() { if (LOG.isDebugEnabled()) { LOG.debug("==> ClassificationSearchProcessor.execute({})", context); } List<AtlasVertex> ret = new ArrayList<>(); AtlasPerfTracer perf = null; if (AtlasPerfTracer.isPerfTraceEnabled(PERF_LO... |
@Test public void searchByTagAndGraphSysFilters() throws AtlasBaseException { SearchParameters params = new SearchParameters(); params.setClassification(DIMENSION_CLASSIFICATION); FilterCriteria filterCriteria = getSingleFilterCondition("__entityStatus", Operator.EQ, "DELETED"); params.setTagFilters(filterCriteria); pa... | @Override public List<AtlasVertex> execute() { if (LOG.isDebugEnabled()) { LOG.debug("==> ClassificationSearchProcessor.execute({})", context); } List<AtlasVertex> ret = new ArrayList<>(); AtlasPerfTracer perf = null; if (AtlasPerfTracer.isPerfTraceEnabled(PERF_LOG)) { perf = AtlasPerfTracer.getPerfTracer(PERF_LOG, "Cl... | ClassificationSearchProcessor extends SearchProcessor { @Override public List<AtlasVertex> execute() { if (LOG.isDebugEnabled()) { LOG.debug("==> ClassificationSearchProcessor.execute({})", context); } List<AtlasVertex> ret = new ArrayList<>(); AtlasPerfTracer perf = null; if (AtlasPerfTracer.isPerfTraceEnabled(PERF_LO... | ClassificationSearchProcessor extends SearchProcessor { @Override public List<AtlasVertex> execute() { if (LOG.isDebugEnabled()) { LOG.debug("==> ClassificationSearchProcessor.execute({})", context); } List<AtlasVertex> ret = new ArrayList<>(); AtlasPerfTracer perf = null; if (AtlasPerfTracer.isPerfTraceEnabled(PERF_LO... | ClassificationSearchProcessor extends SearchProcessor { @Override public List<AtlasVertex> execute() { if (LOG.isDebugEnabled()) { LOG.debug("==> ClassificationSearchProcessor.execute({})", context); } List<AtlasVertex> ret = new ArrayList<>(); AtlasPerfTracer perf = null; if (AtlasPerfTracer.isPerfTraceEnabled(PERF_LO... | ClassificationSearchProcessor extends SearchProcessor { @Override public List<AtlasVertex> execute() { if (LOG.isDebugEnabled()) { LOG.debug("==> ClassificationSearchProcessor.execute({})", context); } List<AtlasVertex> ret = new ArrayList<>(); AtlasPerfTracer perf = null; if (AtlasPerfTracer.isPerfTraceEnabled(PERF_LO... |
@Test(priority = -1) public void searchWithNEQ_stringAttr() throws AtlasBaseException { createDummyEntity(expectedEntityName,HIVE_TABLE_TYPE); SearchParameters params = new SearchParameters(); params.setTypeName(HIVE_TABLE_TYPE); SearchParameters.FilterCriteria filterCriteria = getSingleFilterCondition("tableType", Sea... | @Override public List<AtlasVertex> execute() { if (LOG.isDebugEnabled()) { LOG.debug("==> EntitySearchProcessor.execute({})", context); } List<AtlasVertex> ret = new ArrayList<>(); AtlasPerfTracer perf = null; if (AtlasPerfTracer.isPerfTraceEnabled(PERF_LOG)) { perf = AtlasPerfTracer.getPerfTracer(PERF_LOG, "EntitySear... | EntitySearchProcessor extends SearchProcessor { @Override public List<AtlasVertex> execute() { if (LOG.isDebugEnabled()) { LOG.debug("==> EntitySearchProcessor.execute({})", context); } List<AtlasVertex> ret = new ArrayList<>(); AtlasPerfTracer perf = null; if (AtlasPerfTracer.isPerfTraceEnabled(PERF_LOG)) { perf = Atl... | EntitySearchProcessor extends SearchProcessor { @Override public List<AtlasVertex> execute() { if (LOG.isDebugEnabled()) { LOG.debug("==> EntitySearchProcessor.execute({})", context); } List<AtlasVertex> ret = new ArrayList<>(); AtlasPerfTracer perf = null; if (AtlasPerfTracer.isPerfTraceEnabled(PERF_LOG)) { perf = Atl... | EntitySearchProcessor extends SearchProcessor { @Override public List<AtlasVertex> execute() { if (LOG.isDebugEnabled()) { LOG.debug("==> EntitySearchProcessor.execute({})", context); } List<AtlasVertex> ret = new ArrayList<>(); AtlasPerfTracer perf = null; if (AtlasPerfTracer.isPerfTraceEnabled(PERF_LOG)) { perf = Atl... | EntitySearchProcessor extends SearchProcessor { @Override public List<AtlasVertex> execute() { if (LOG.isDebugEnabled()) { LOG.debug("==> EntitySearchProcessor.execute({})", context); } List<AtlasVertex> ret = new ArrayList<>(); AtlasPerfTracer perf = null; if (AtlasPerfTracer.isPerfTraceEnabled(PERF_LOG)) { perf = Atl... |
@Test public void searchWithNEQ_pipeSeperatedAttr() throws AtlasBaseException { SearchParameters params = new SearchParameters(); params.setTypeName(HIVE_TABLE_TYPE); SearchParameters.FilterCriteria filterCriteria = getSingleFilterCondition("__classificationNames", SearchParameters.Operator.NEQ, METRIC_CLASSIFICATION);... | @Override public List<AtlasVertex> execute() { if (LOG.isDebugEnabled()) { LOG.debug("==> EntitySearchProcessor.execute({})", context); } List<AtlasVertex> ret = new ArrayList<>(); AtlasPerfTracer perf = null; if (AtlasPerfTracer.isPerfTraceEnabled(PERF_LOG)) { perf = AtlasPerfTracer.getPerfTracer(PERF_LOG, "EntitySear... | EntitySearchProcessor extends SearchProcessor { @Override public List<AtlasVertex> execute() { if (LOG.isDebugEnabled()) { LOG.debug("==> EntitySearchProcessor.execute({})", context); } List<AtlasVertex> ret = new ArrayList<>(); AtlasPerfTracer perf = null; if (AtlasPerfTracer.isPerfTraceEnabled(PERF_LOG)) { perf = Atl... | EntitySearchProcessor extends SearchProcessor { @Override public List<AtlasVertex> execute() { if (LOG.isDebugEnabled()) { LOG.debug("==> EntitySearchProcessor.execute({})", context); } List<AtlasVertex> ret = new ArrayList<>(); AtlasPerfTracer perf = null; if (AtlasPerfTracer.isPerfTraceEnabled(PERF_LOG)) { perf = Atl... | EntitySearchProcessor extends SearchProcessor { @Override public List<AtlasVertex> execute() { if (LOG.isDebugEnabled()) { LOG.debug("==> EntitySearchProcessor.execute({})", context); } List<AtlasVertex> ret = new ArrayList<>(); AtlasPerfTracer perf = null; if (AtlasPerfTracer.isPerfTraceEnabled(PERF_LOG)) { perf = Atl... | EntitySearchProcessor extends SearchProcessor { @Override public List<AtlasVertex> execute() { if (LOG.isDebugEnabled()) { LOG.debug("==> EntitySearchProcessor.execute({})", context); } List<AtlasVertex> ret = new ArrayList<>(); AtlasPerfTracer perf = null; if (AtlasPerfTracer.isPerfTraceEnabled(PERF_LOG)) { perf = Atl... |
@Test public void searchWithNEQ_doubleAttr() throws AtlasBaseException { SearchParameters params = new SearchParameters(); params.setTypeName(HIVE_TABLE_TYPE); SearchParameters.FilterCriteria filterCriteria = getSingleFilterCondition("retention", SearchParameters.Operator.NEQ, "5"); params.setEntityFilters(filterCriter... | @Override public List<AtlasVertex> execute() { if (LOG.isDebugEnabled()) { LOG.debug("==> EntitySearchProcessor.execute({})", context); } List<AtlasVertex> ret = new ArrayList<>(); AtlasPerfTracer perf = null; if (AtlasPerfTracer.isPerfTraceEnabled(PERF_LOG)) { perf = AtlasPerfTracer.getPerfTracer(PERF_LOG, "EntitySear... | EntitySearchProcessor extends SearchProcessor { @Override public List<AtlasVertex> execute() { if (LOG.isDebugEnabled()) { LOG.debug("==> EntitySearchProcessor.execute({})", context); } List<AtlasVertex> ret = new ArrayList<>(); AtlasPerfTracer perf = null; if (AtlasPerfTracer.isPerfTraceEnabled(PERF_LOG)) { perf = Atl... | EntitySearchProcessor extends SearchProcessor { @Override public List<AtlasVertex> execute() { if (LOG.isDebugEnabled()) { LOG.debug("==> EntitySearchProcessor.execute({})", context); } List<AtlasVertex> ret = new ArrayList<>(); AtlasPerfTracer perf = null; if (AtlasPerfTracer.isPerfTraceEnabled(PERF_LOG)) { perf = Atl... | EntitySearchProcessor extends SearchProcessor { @Override public List<AtlasVertex> execute() { if (LOG.isDebugEnabled()) { LOG.debug("==> EntitySearchProcessor.execute({})", context); } List<AtlasVertex> ret = new ArrayList<>(); AtlasPerfTracer perf = null; if (AtlasPerfTracer.isPerfTraceEnabled(PERF_LOG)) { perf = Atl... | EntitySearchProcessor extends SearchProcessor { @Override public List<AtlasVertex> execute() { if (LOG.isDebugEnabled()) { LOG.debug("==> EntitySearchProcessor.execute({})", context); } List<AtlasVertex> ret = new ArrayList<>(); AtlasPerfTracer perf = null; if (AtlasPerfTracer.isPerfTraceEnabled(PERF_LOG)) { perf = Atl... |
@Test public void testMapTypeDefaultValue() { Map<Object, Object> defValue = intIntMapType.createDefaultValue(); assertEquals(defValue.size(), 1); } | @Override public Map<Object, Object> createDefaultValue() { Map<Object, Object> ret = new HashMap<>(); Object key = keyType.createDefaultValue(); if ( key != null) { ret.put(key, valueType.createDefaultValue()); } return ret; } | AtlasMapType extends AtlasType { @Override public Map<Object, Object> createDefaultValue() { Map<Object, Object> ret = new HashMap<>(); Object key = keyType.createDefaultValue(); if ( key != null) { ret.put(key, valueType.createDefaultValue()); } return ret; } } | AtlasMapType extends AtlasType { @Override public Map<Object, Object> createDefaultValue() { Map<Object, Object> ret = new HashMap<>(); Object key = keyType.createDefaultValue(); if ( key != null) { ret.put(key, valueType.createDefaultValue()); } return ret; } AtlasMapType(AtlasType keyType, AtlasType valueType); Atla... | AtlasMapType extends AtlasType { @Override public Map<Object, Object> createDefaultValue() { Map<Object, Object> ret = new HashMap<>(); Object key = keyType.createDefaultValue(); if ( key != null) { ret.put(key, valueType.createDefaultValue()); } return ret; } AtlasMapType(AtlasType keyType, AtlasType valueType); Atla... | AtlasMapType extends AtlasType { @Override public Map<Object, Object> createDefaultValue() { Map<Object, Object> ret = new HashMap<>(); Object key = keyType.createDefaultValue(); if ( key != null) { ret.put(key, valueType.createDefaultValue()); } return ret; } AtlasMapType(AtlasType keyType, AtlasType valueType); Atla... |
@Test public void shouldCreateBus() { Bus bus = ReactiveBus.create(); assertThat(bus).isNotNull(); } | public static ReactiveBus create() { return new ReactiveBus(); } | ReactiveBus implements Bus { public static ReactiveBus create() { return new ReactiveBus(); } } | ReactiveBus implements Bus { public static ReactiveBus create() { return new ReactiveBus(); } } | ReactiveBus implements Bus { public static ReactiveBus create() { return new ReactiveBus(); } static ReactiveBus create(); @Override void send(final Event object); @Override @SuppressWarnings("unchecked") Flowable<Event> receive(); } | ReactiveBus implements Bus { public static ReactiveBus create() { return new ReactiveBus(); } static ReactiveBus create(); @Override void send(final Event object); @Override @SuppressWarnings("unchecked") Flowable<Event> receive(); } |
@Test public void shouldCreateEvent() { Event event = Event.create(); assertThat(event).isNotNull(); } | public static Event create() { return Event.builder().build(); } | Event { public static Event create() { return Event.builder().build(); } } | Event { public static Event create() { return Event.builder().build(); } protected Event(String id, String name, Serializable data); protected Event(String id, String name); protected Event(Builder builder); protected Event(); } | Event { public static Event create() { return Event.builder().build(); } protected Event(String id, String name, Serializable data); protected Event(String id, String name); protected Event(Builder builder); protected Event(); static Event create(); static Builder id(final String id); String id(); static Builder na... | Event { public static Event create() { return Event.builder().build(); } protected Event(String id, String name, Serializable data); protected Event(String id, String name); protected Event(Builder builder); protected Event(); static Event create(); static Builder id(final String id); String id(); static Builder na... |
@Test public void testPutWithoutValidation() throws Exception { final String tenant = name.getMethodName(); tenantRegistry.createTenantContext(tenant); final RestDataSourceDefinition dataSourceDefinition = new RestDataSourceDefinition(); dataSourceDefinition.setType("foo bar"); dataSourceDefinition.set("hello", "world"... | @RequestMapping(method = RequestMethod.PUT) @ResponseBody public GetDatasourceResponse put(@PathVariable("tenant") String tenantId, @PathVariable("datasource") String dataSourceId, @RequestParam(value = "validate", required = false) Boolean validate, @Valid @RequestBody RestDataSourceDefinition dataSourceDefinition) { ... | DataSourceController { @RequestMapping(method = RequestMethod.PUT) @ResponseBody public GetDatasourceResponse put(@PathVariable("tenant") String tenantId, @PathVariable("datasource") String dataSourceId, @RequestParam(value = "validate", required = false) Boolean validate, @Valid @RequestBody RestDataSourceDefinition d... | DataSourceController { @RequestMapping(method = RequestMethod.PUT) @ResponseBody public GetDatasourceResponse put(@PathVariable("tenant") String tenantId, @PathVariable("datasource") String dataSourceId, @RequestParam(value = "validate", required = false) Boolean validate, @Valid @RequestBody RestDataSourceDefinition d... | DataSourceController { @RequestMapping(method = RequestMethod.PUT) @ResponseBody public GetDatasourceResponse put(@PathVariable("tenant") String tenantId, @PathVariable("datasource") String dataSourceId, @RequestParam(value = "validate", required = false) Boolean validate, @Valid @RequestBody RestDataSourceDefinition d... | DataSourceController { @RequestMapping(method = RequestMethod.PUT) @ResponseBody public GetDatasourceResponse put(@PathVariable("tenant") String tenantId, @PathVariable("datasource") String dataSourceId, @RequestParam(value = "validate", required = false) Boolean validate, @Valid @RequestBody RestDataSourceDefinition d... |
@Test public void testPutWithValidationFailing() throws Exception { final String tenant = name.getMethodName(); tenantRegistry.createTenantContext(tenant); final RestDataSourceDefinition dataSourceDefinition = new RestDataSourceDefinition(); dataSourceDefinition.setType("foo bar"); dataSourceDefinition.set("hello", "wo... | @RequestMapping(method = RequestMethod.PUT) @ResponseBody public GetDatasourceResponse put(@PathVariable("tenant") String tenantId, @PathVariable("datasource") String dataSourceId, @RequestParam(value = "validate", required = false) Boolean validate, @Valid @RequestBody RestDataSourceDefinition dataSourceDefinition) { ... | DataSourceController { @RequestMapping(method = RequestMethod.PUT) @ResponseBody public GetDatasourceResponse put(@PathVariable("tenant") String tenantId, @PathVariable("datasource") String dataSourceId, @RequestParam(value = "validate", required = false) Boolean validate, @Valid @RequestBody RestDataSourceDefinition d... | DataSourceController { @RequestMapping(method = RequestMethod.PUT) @ResponseBody public GetDatasourceResponse put(@PathVariable("tenant") String tenantId, @PathVariable("datasource") String dataSourceId, @RequestParam(value = "validate", required = false) Boolean validate, @Valid @RequestBody RestDataSourceDefinition d... | DataSourceController { @RequestMapping(method = RequestMethod.PUT) @ResponseBody public GetDatasourceResponse put(@PathVariable("tenant") String tenantId, @PathVariable("datasource") String dataSourceId, @RequestParam(value = "validate", required = false) Boolean validate, @Valid @RequestBody RestDataSourceDefinition d... | DataSourceController { @RequestMapping(method = RequestMethod.PUT) @ResponseBody public GetDatasourceResponse put(@PathVariable("tenant") String tenantId, @PathVariable("datasource") String dataSourceId, @RequestParam(value = "validate", required = false) Boolean validate, @Valid @RequestBody RestDataSourceDefinition d... |
@Test public void testPutWithValidationPassing() throws Exception { final String tenant = name.getMethodName(); tenantRegistry.createTenantContext(tenant); final RestDataSourceDefinition dataSourceDefinition = new RestDataSourceDefinition(); dataSourceDefinition.setType("pojo"); final GetDatasourceResponse resp = dataS... | @RequestMapping(method = RequestMethod.PUT) @ResponseBody public GetDatasourceResponse put(@PathVariable("tenant") String tenantId, @PathVariable("datasource") String dataSourceId, @RequestParam(value = "validate", required = false) Boolean validate, @Valid @RequestBody RestDataSourceDefinition dataSourceDefinition) { ... | DataSourceController { @RequestMapping(method = RequestMethod.PUT) @ResponseBody public GetDatasourceResponse put(@PathVariable("tenant") String tenantId, @PathVariable("datasource") String dataSourceId, @RequestParam(value = "validate", required = false) Boolean validate, @Valid @RequestBody RestDataSourceDefinition d... | DataSourceController { @RequestMapping(method = RequestMethod.PUT) @ResponseBody public GetDatasourceResponse put(@PathVariable("tenant") String tenantId, @PathVariable("datasource") String dataSourceId, @RequestParam(value = "validate", required = false) Boolean validate, @Valid @RequestBody RestDataSourceDefinition d... | DataSourceController { @RequestMapping(method = RequestMethod.PUT) @ResponseBody public GetDatasourceResponse put(@PathVariable("tenant") String tenantId, @PathVariable("datasource") String dataSourceId, @RequestParam(value = "validate", required = false) Boolean validate, @Valid @RequestBody RestDataSourceDefinition d... | DataSourceController { @RequestMapping(method = RequestMethod.PUT) @ResponseBody public GetDatasourceResponse put(@PathVariable("tenant") String tenantId, @PathVariable("datasource") String dataSourceId, @RequestParam(value = "validate", required = false) Boolean validate, @Valid @RequestBody RestDataSourceDefinition d... |
@Test public void testToString() { assertEquals("ImmutableEdge [source=1, dest=2, id=1]", edge.toString()); } | @Override public String toString() { return "ImmutableEdge [source=" + source + ", dest=" + dest + ", id=" + id + "]"; } | ImmutableEdge implements Edge<V> { @Override public String toString() { return "ImmutableEdge [source=" + source + ", dest=" + dest + ", id=" + id + "]"; } } | ImmutableEdge implements Edge<V> { @Override public String toString() { return "ImmutableEdge [source=" + source + ", dest=" + dest + ", id=" + id + "]"; } ImmutableEdge(final V source, final V dest, final int id); } | ImmutableEdge implements Edge<V> { @Override public String toString() { return "ImmutableEdge [source=" + source + ", dest=" + dest + ", id=" + id + "]"; } ImmutableEdge(final V source, final V dest, final int id); static ImmutableEdge<V> construct(final V source, final V dest,
final int id); @Override final V ge... | ImmutableEdge implements Edge<V> { @Override public String toString() { return "ImmutableEdge [source=" + source + ", dest=" + dest + ", id=" + id + "]"; } ImmutableEdge(final V source, final V dest, final int id); static ImmutableEdge<V> construct(final V source, final V dest,
final int id); @Override final V ge... |
@Test public void testRun() { List<Double> values = new ArrayList<>(); for (int i = 0; i < 10_000; ++i) { values.add(rng.nextDouble()); } Assert.assertEquals(0.5, values.stream().mapToDouble(x -> (double) x).average().orElse(-1.0), 0.01); } | public double nextDouble() { return (((long) next(26) << 27) + next(27)) / (double) (1L << 53); } | MersenneTwister extends java.util.Random implements Serializable, Cloneable { public double nextDouble() { return (((long) next(26) << 27) + next(27)) / (double) (1L << 53); } } | MersenneTwister extends java.util.Random implements Serializable, Cloneable { public double nextDouble() { return (((long) next(26) << 27) + next(27)) / (double) (1L << 53); } MersenneTwister(); MersenneTwister(long seed); MersenneTwister(int[] array); } | MersenneTwister extends java.util.Random implements Serializable, Cloneable { public double nextDouble() { return (((long) next(26) << 27) + next(27)) / (double) (1L << 53); } MersenneTwister(); MersenneTwister(long seed); MersenneTwister(int[] array); @Override Object clone(); synchronized boolean stateEquals(Mersen... | MersenneTwister extends java.util.Random implements Serializable, Cloneable { public double nextDouble() { return (((long) next(26) << 27) + next(27)) / (double) (1L << 53); } MersenneTwister(); MersenneTwister(long seed); MersenneTwister(int[] array); @Override Object clone(); synchronized boolean stateEquals(Mersen... |
@Test public void testVisitChildrenOf() { Set<TermId> children = new TreeSet<>(); OntologyTerms.visitChildrenOf(idRootVegetable, ontology, new TermVisitor<ImmutableOntology<VegetableTerm, VegetableTermRelation>>() { @Override public boolean visit(ImmutableOntology<VegetableTerm, VegetableTermRelation> ontology, TermId ... | public static <O extends Ontology<?, ?>> void visitChildrenOf(TermId termId, O ontology, TermVisitor<O> termVisitor) { BreadthFirstSearch<TermId, ImmutableEdge<TermId>> bfs = new BreadthFirstSearch<>(); @SuppressWarnings("unchecked") DirectedGraph<TermId, ImmutableEdge<TermId>> graph = (DirectedGraph<TermId, ImmutableE... | OntologyTerms { public static <O extends Ontology<?, ?>> void visitChildrenOf(TermId termId, O ontology, TermVisitor<O> termVisitor) { BreadthFirstSearch<TermId, ImmutableEdge<TermId>> bfs = new BreadthFirstSearch<>(); @SuppressWarnings("unchecked") DirectedGraph<TermId, ImmutableEdge<TermId>> graph = (DirectedGraph<Te... | OntologyTerms { public static <O extends Ontology<?, ?>> void visitChildrenOf(TermId termId, O ontology, TermVisitor<O> termVisitor) { BreadthFirstSearch<TermId, ImmutableEdge<TermId>> bfs = new BreadthFirstSearch<>(); @SuppressWarnings("unchecked") DirectedGraph<TermId, ImmutableEdge<TermId>> graph = (DirectedGraph<Te... | OntologyTerms { public static <O extends Ontology<?, ?>> void visitChildrenOf(TermId termId, O ontology, TermVisitor<O> termVisitor) { BreadthFirstSearch<TermId, ImmutableEdge<TermId>> bfs = new BreadthFirstSearch<>(); @SuppressWarnings("unchecked") DirectedGraph<TermId, ImmutableEdge<TermId>> graph = (DirectedGraph<Te... | OntologyTerms { public static <O extends Ontology<?, ?>> void visitChildrenOf(TermId termId, O ontology, TermVisitor<O> termVisitor) { BreadthFirstSearch<TermId, ImmutableEdge<TermId>> bfs = new BreadthFirstSearch<>(); @SuppressWarnings("unchecked") DirectedGraph<TermId, ImmutableEdge<TermId>> graph = (DirectedGraph<Te... |
@Test public void testChildrenOf() { assertEquals( "[ImmutableTermId [prefix=ImmutableTermPrefix [value=VO], id=0000004], ImmutableTermId [prefix=ImmutableTermPrefix [value=VO], id=0000005], ImmutableTermId [prefix=ImmutableTermPrefix [value=VO], id=0000006], ImmutableTermId [prefix=ImmutableTermPrefix [value=VO], id=0... | public static <O extends Ontology<?, ?>> Set<TermId> childrenOf(TermId termId, O ontology) { Set<TermId> result = new HashSet<>(); visitChildrenOf(termId, ontology, new TermVisitor<O>() { @Override public boolean visit(O ontology, TermId termId) { result.add(termId); return true; } }); return result; } | OntologyTerms { public static <O extends Ontology<?, ?>> Set<TermId> childrenOf(TermId termId, O ontology) { Set<TermId> result = new HashSet<>(); visitChildrenOf(termId, ontology, new TermVisitor<O>() { @Override public boolean visit(O ontology, TermId termId) { result.add(termId); return true; } }); return result; } ... | OntologyTerms { public static <O extends Ontology<?, ?>> Set<TermId> childrenOf(TermId termId, O ontology) { Set<TermId> result = new HashSet<>(); visitChildrenOf(termId, ontology, new TermVisitor<O>() { @Override public boolean visit(O ontology, TermId termId) { result.add(termId); return true; } }); return result; } ... | OntologyTerms { public static <O extends Ontology<?, ?>> Set<TermId> childrenOf(TermId termId, O ontology) { Set<TermId> result = new HashSet<>(); visitChildrenOf(termId, ontology, new TermVisitor<O>() { @Override public boolean visit(O ontology, TermId termId) { result.add(termId); return true; } }); return result; } ... | OntologyTerms { public static <O extends Ontology<?, ?>> Set<TermId> childrenOf(TermId termId, O ontology) { Set<TermId> result = new HashSet<>(); visitChildrenOf(termId, ontology, new TermVisitor<O>() { @Override public boolean visit(O ontology, TermId termId) { result.add(termId); return true; } }); return result; } ... |
@Test public void testVisitParentsOf() { Set<TermId> parents = new TreeSet<>(); OntologyTerms.visitParentsOf(idBlueCarrot, ontology, new TermVisitor<ImmutableOntology<VegetableTerm, VegetableTermRelation>>() { @Override public boolean visit(ImmutableOntology<VegetableTerm, VegetableTermRelation> ontology, TermId termId... | public static <O extends Ontology<?, ?>> void visitParentsOf(TermId termId, O ontology, TermVisitor<O> termVisitor) { BreadthFirstSearch<TermId, ImmutableEdge<TermId>> bfs = new BreadthFirstSearch<>(); @SuppressWarnings("unchecked") DirectedGraph<TermId, ImmutableEdge<TermId>> graph = (DirectedGraph<TermId, ImmutableEd... | OntologyTerms { public static <O extends Ontology<?, ?>> void visitParentsOf(TermId termId, O ontology, TermVisitor<O> termVisitor) { BreadthFirstSearch<TermId, ImmutableEdge<TermId>> bfs = new BreadthFirstSearch<>(); @SuppressWarnings("unchecked") DirectedGraph<TermId, ImmutableEdge<TermId>> graph = (DirectedGraph<Ter... | OntologyTerms { public static <O extends Ontology<?, ?>> void visitParentsOf(TermId termId, O ontology, TermVisitor<O> termVisitor) { BreadthFirstSearch<TermId, ImmutableEdge<TermId>> bfs = new BreadthFirstSearch<>(); @SuppressWarnings("unchecked") DirectedGraph<TermId, ImmutableEdge<TermId>> graph = (DirectedGraph<Ter... | OntologyTerms { public static <O extends Ontology<?, ?>> void visitParentsOf(TermId termId, O ontology, TermVisitor<O> termVisitor) { BreadthFirstSearch<TermId, ImmutableEdge<TermId>> bfs = new BreadthFirstSearch<>(); @SuppressWarnings("unchecked") DirectedGraph<TermId, ImmutableEdge<TermId>> graph = (DirectedGraph<Ter... | OntologyTerms { public static <O extends Ontology<?, ?>> void visitParentsOf(TermId termId, O ontology, TermVisitor<O> termVisitor) { BreadthFirstSearch<TermId, ImmutableEdge<TermId>> bfs = new BreadthFirstSearch<>(); @SuppressWarnings("unchecked") DirectedGraph<TermId, ImmutableEdge<TermId>> graph = (DirectedGraph<Ter... |
@Test public void testParentsOf() { assertEquals( "[ImmutableTermId [prefix=ImmutableTermPrefix [value=VO], id=0000004], ImmutableTermId [prefix=ImmutableTermPrefix [value=VO], id=0000007], ImmutableTermId [prefix=ImmutableTermPrefix [value=VO], id=0000001], ImmutableTermId [prefix=ImmutableTermPrefix [value=VO], id=00... | public static <O extends Ontology<?, ?>> Set<TermId> parentsOf(TermId termId, O ontology) { Set<TermId> result = new HashSet<>(); visitParentsOf(termId, ontology, new TermVisitor<O>() { @Override public boolean visit(O ontology, TermId termId) { result.add(termId); return true; } }); return result; } | OntologyTerms { public static <O extends Ontology<?, ?>> Set<TermId> parentsOf(TermId termId, O ontology) { Set<TermId> result = new HashSet<>(); visitParentsOf(termId, ontology, new TermVisitor<O>() { @Override public boolean visit(O ontology, TermId termId) { result.add(termId); return true; } }); return result; } } | OntologyTerms { public static <O extends Ontology<?, ?>> Set<TermId> parentsOf(TermId termId, O ontology) { Set<TermId> result = new HashSet<>(); visitParentsOf(termId, ontology, new TermVisitor<O>() { @Override public boolean visit(O ontology, TermId termId) { result.add(termId); return true; } }); return result; } } | OntologyTerms { public static <O extends Ontology<?, ?>> Set<TermId> parentsOf(TermId termId, O ontology) { Set<TermId> result = new HashSet<>(); visitParentsOf(termId, ontology, new TermVisitor<O>() { @Override public boolean visit(O ontology, TermId termId) { result.add(termId); return true; } }); return result; } s... | OntologyTerms { public static <O extends Ontology<?, ?>> Set<TermId> parentsOf(TermId termId, O ontology) { Set<TermId> result = new HashSet<>(); visitParentsOf(termId, ontology, new TermVisitor<O>() { @Override public boolean visit(O ontology, TermId termId) { result.add(termId); return true; } }); return result; } s... |
@Test public void test() { Map<TermId, Collection<String>> termLabels = TermAnnotations.constructTermAnnotationToLabelsMap(ontology, recipeAnnotations); Map<TermId, Double> informationContent = computation.computeInformationContent(termLabels); assertEquals(7, informationContent.size()); assertEquals(0.0, informationCo... | public <LabelT> Map<TermId, Double> computeInformationContent(Map<TermId, ? extends Collection<LabelT>> termLabels) { LOGGER.info("Computing IC of {} terms using {} labels...", new Object[] {ontology.countAllTerms(), termLabels.values().stream().mapToInt(l -> l.size()).sum()}); final TermId root = ontology.getRootTermI... | InformationContentComputation { public <LabelT> Map<TermId, Double> computeInformationContent(Map<TermId, ? extends Collection<LabelT>> termLabels) { LOGGER.info("Computing IC of {} terms using {} labels...", new Object[] {ontology.countAllTerms(), termLabels.values().stream().mapToInt(l -> l.size()).sum()}); final Ter... | InformationContentComputation { public <LabelT> Map<TermId, Double> computeInformationContent(Map<TermId, ? extends Collection<LabelT>> termLabels) { LOGGER.info("Computing IC of {} terms using {} labels...", new Object[] {ontology.countAllTerms(), termLabels.values().stream().mapToInt(l -> l.size()).sum()}); final Ter... | InformationContentComputation { public <LabelT> Map<TermId, Double> computeInformationContent(Map<TermId, ? extends Collection<LabelT>> termLabels) { LOGGER.info("Computing IC of {} terms using {} labels...", new Object[] {ontology.countAllTerms(), termLabels.values().stream().mapToInt(l -> l.size()).sum()}); final Ter... | InformationContentComputation { public <LabelT> Map<TermId, Double> computeInformationContent(Map<TermId, ? extends Collection<LabelT>> termLabels) { LOGGER.info("Computing IC of {} terms using {} labels...", new Object[] {ontology.countAllTerms(), termLabels.values().stream().mapToInt(l -> l.size()).sum()}); final Ter... |
@Test public void test() { Map<String, Integer> recipeToId = new HashMap<>(); Map<Integer, Set<TermId>> labels = new HashMap<>(); int nextId = 1; for (VegetableRecipeAnnotation a : recipeAnnotations) { if (!recipeToId.containsKey(a.getLabel())) { recipeToId.put(a.getLabel(), nextId++); } final int recipeId = recipeToId... | public Map<Integer, ScoreDistribution> performSampling( Map<Integer, ? extends Collection<TermId>> labels) { Map<Integer, ScoreDistribution> result = new HashMap<>(); for (int numTerms = options.getMinNumTerms(); numTerms <= options .getMaxNumTerms(); ++numTerms) { result.put(numTerms, performSamplingForTermCount(label... | SimilarityScoreSampling { public Map<Integer, ScoreDistribution> performSampling( Map<Integer, ? extends Collection<TermId>> labels) { Map<Integer, ScoreDistribution> result = new HashMap<>(); for (int numTerms = options.getMinNumTerms(); numTerms <= options .getMaxNumTerms(); ++numTerms) { result.put(numTerms, perform... | SimilarityScoreSampling { public Map<Integer, ScoreDistribution> performSampling( Map<Integer, ? extends Collection<TermId>> labels) { Map<Integer, ScoreDistribution> result = new HashMap<>(); for (int numTerms = options.getMinNumTerms(); numTerms <= options .getMaxNumTerms(); ++numTerms) { result.put(numTerms, perform... | SimilarityScoreSampling { public Map<Integer, ScoreDistribution> performSampling( Map<Integer, ? extends Collection<TermId>> labels) { Map<Integer, ScoreDistribution> result = new HashMap<>(); for (int numTerms = options.getMinNumTerms(); numTerms <= options .getMaxNumTerms(); ++numTerms) { result.put(numTerms, perform... | SimilarityScoreSampling { public Map<Integer, ScoreDistribution> performSampling( Map<Integer, ? extends Collection<TermId>> labels) { Map<Integer, ScoreDistribution> result = new HashMap<>(); for (int numTerms = options.getMinNumTerms(); numTerms <= options .getMaxNumTerms(); ++numTerms) { result.put(numTerms, perform... |
@Test public void testEstimatePValue() { assertEquals(1.0, objDist.estimatePValue(0.0), 0.01); assertEquals(0.82, objDist.estimatePValue(0.2), 0.01); assertEquals(0.82, objDist.estimatePValue(0.4), 0.01); assertEquals(0.42, objDist.estimatePValue(0.6), 0.01); assertEquals(0.42, objDist.estimatePValue(0.8), 0.01); asser... | public double estimatePValue(double score) { Entry<Double, Double> previous = null; for (Entry<Double, Double> entry : cumulativeFrequencies.entrySet()) { if (previous == null && score < entry.getKey()) { return 1.0; } if (previous != null && previous.getKey() <= score && score < entry.getKey()) { final double dx = (en... | ObjectScoreDistribution implements Serializable { public double estimatePValue(double score) { Entry<Double, Double> previous = null; for (Entry<Double, Double> entry : cumulativeFrequencies.entrySet()) { if (previous == null && score < entry.getKey()) { return 1.0; } if (previous != null && previous.getKey() <= score ... | ObjectScoreDistribution implements Serializable { public double estimatePValue(double score) { Entry<Double, Double> previous = null; for (Entry<Double, Double> entry : cumulativeFrequencies.entrySet()) { if (previous == null && score < entry.getKey()) { return 1.0; } if (previous != null && previous.getKey() <= score ... | ObjectScoreDistribution implements Serializable { public double estimatePValue(double score) { Entry<Double, Double> previous = null; for (Entry<Double, Double> entry : cumulativeFrequencies.entrySet()) { if (previous == null && score < entry.getKey()) { return 1.0; } if (previous != null && previous.getKey() <= score ... | ObjectScoreDistribution implements Serializable { public double estimatePValue(double score) { Entry<Double, Double> previous = null; for (Entry<Double, Double> entry : cumulativeFrequencies.entrySet()) { if (previous == null && score < entry.getKey()) { return 1.0; } if (previous != null && previous.getKey() <= score ... |
@Test public void test() { ScoreDistribution result = ScoreDistributions.merge(dist1, dist2); assertEquals(2, result.getNumTerms()); assertEquals("[1, 2]", ImmutableSortedSet.copyOf(result.getObjectIds()).toString()); assertEquals(1, result.getObjectScoreDistribution(1).getObjectId()); assertEquals(2, result.getObjectS... | public static ScoreDistribution merge(Collection<ScoreDistribution> distributions) { if (distributions.isEmpty()) { throw new CannotMergeScoreDistributions("Cannot merge zero ScoreDistributions objects."); } if (distributions.stream().map(d -> d.getNumTerms()).collect(Collectors.toSet()).size() != 1) { throw new Cannot... | ScoreDistributions { public static ScoreDistribution merge(Collection<ScoreDistribution> distributions) { if (distributions.isEmpty()) { throw new CannotMergeScoreDistributions("Cannot merge zero ScoreDistributions objects."); } if (distributions.stream().map(d -> d.getNumTerms()).collect(Collectors.toSet()).size() != ... | ScoreDistributions { public static ScoreDistribution merge(Collection<ScoreDistribution> distributions) { if (distributions.isEmpty()) { throw new CannotMergeScoreDistributions("Cannot merge zero ScoreDistributions objects."); } if (distributions.stream().map(d -> d.getNumTerms()).collect(Collectors.toSet()).size() != ... | ScoreDistributions { public static ScoreDistribution merge(Collection<ScoreDistribution> distributions) { if (distributions.isEmpty()) { throw new CannotMergeScoreDistributions("Cannot merge zero ScoreDistributions objects."); } if (distributions.stream().map(d -> d.getNumTerms()).collect(Collectors.toSet()).size() != ... | ScoreDistributions { public static ScoreDistribution merge(Collection<ScoreDistribution> distributions) { if (distributions.isEmpty()) { throw new CannotMergeScoreDistributions("Cannot merge zero ScoreDistributions objects."); } if (distributions.stream().map(d -> d.getNumTerms()).collect(Collectors.toSet()).size() != ... |
@Test public void testDefaultConstruction() { samplingOptions = new ScoreSamplingOptions(); assertEquals( "ScoreSamplingOptions [numThreads=1, minObjectId=null, maxObjectId=null, minNumTerms=1, maxNumTerms=20, numIterations=100000, seed=42]", samplingOptions.toString()); } | @Override public String toString() { return "ScoreSamplingOptions [numThreads=" + numThreads + ", minObjectId=" + minObjectId + ", maxObjectId=" + maxObjectId + ", minNumTerms=" + minNumTerms + ", maxNumTerms=" + maxNumTerms + ", numIterations=" + numIterations + ", seed=" + seed + "]"; } | ScoreSamplingOptions implements Serializable, Cloneable { @Override public String toString() { return "ScoreSamplingOptions [numThreads=" + numThreads + ", minObjectId=" + minObjectId + ", maxObjectId=" + maxObjectId + ", minNumTerms=" + minNumTerms + ", maxNumTerms=" + maxNumTerms + ", numIterations=" + numIterations ... | ScoreSamplingOptions implements Serializable, Cloneable { @Override public String toString() { return "ScoreSamplingOptions [numThreads=" + numThreads + ", minObjectId=" + minObjectId + ", maxObjectId=" + maxObjectId + ", minNumTerms=" + minNumTerms + ", maxNumTerms=" + maxNumTerms + ", numIterations=" + numIterations ... | ScoreSamplingOptions implements Serializable, Cloneable { @Override public String toString() { return "ScoreSamplingOptions [numThreads=" + numThreads + ", minObjectId=" + minObjectId + ", maxObjectId=" + maxObjectId + ", minNumTerms=" + minNumTerms + ", maxNumTerms=" + maxNumTerms + ", numIterations=" + numIterations ... | ScoreSamplingOptions implements Serializable, Cloneable { @Override public String toString() { return "ScoreSamplingOptions [numThreads=" + numThreads + ", minObjectId=" + minObjectId + ", maxObjectId=" + maxObjectId + ", minNumTerms=" + minNumTerms + ", maxNumTerms=" + maxNumTerms + ", numIterations=" + numIterations ... |
@Test @SuppressWarnings("unchecked") public void testClone() { ImmutableEdge<Integer> e2 = (ImmutableEdge<Integer>) edge.clone(); assertNotSame(edge, e2); assertEquals(edge, e2); assertEquals("ImmutableEdge [source=1, dest=2, id=1]", e2.toString()); } | @Override public final Object clone() { return new ImmutableEdge<V>(source, dest, id); } | ImmutableEdge implements Edge<V> { @Override public final Object clone() { return new ImmutableEdge<V>(source, dest, id); } } | ImmutableEdge implements Edge<V> { @Override public final Object clone() { return new ImmutableEdge<V>(source, dest, id); } ImmutableEdge(final V source, final V dest, final int id); } | ImmutableEdge implements Edge<V> { @Override public final Object clone() { return new ImmutableEdge<V>(source, dest, id); } ImmutableEdge(final V source, final V dest, final int id); static ImmutableEdge<V> construct(final V source, final V dest,
final int id); @Override final V getSource(); @Override final V get... | ImmutableEdge implements Edge<V> { @Override public final Object clone() { return new ImmutableEdge<V>(source, dest, id); } ImmutableEdge(final V source, final V dest, final int id); static ImmutableEdge<V> construct(final V source, final V dest,
final int id); @Override final V getSource(); @Override final V get... |
@Test public void testFullConstruction() { samplingOptions = new ScoreSamplingOptions(1, 1, 2, 3, 4, 5, 6); assertEquals( "ScoreSamplingOptions [numThreads=1, minObjectId=1, maxObjectId=2, minNumTerms=3, maxNumTerms=4, numIterations=6, seed=5]", samplingOptions.toString()); } | @Override public String toString() { return "ScoreSamplingOptions [numThreads=" + numThreads + ", minObjectId=" + minObjectId + ", maxObjectId=" + maxObjectId + ", minNumTerms=" + minNumTerms + ", maxNumTerms=" + maxNumTerms + ", numIterations=" + numIterations + ", seed=" + seed + "]"; } | ScoreSamplingOptions implements Serializable, Cloneable { @Override public String toString() { return "ScoreSamplingOptions [numThreads=" + numThreads + ", minObjectId=" + minObjectId + ", maxObjectId=" + maxObjectId + ", minNumTerms=" + minNumTerms + ", maxNumTerms=" + maxNumTerms + ", numIterations=" + numIterations ... | ScoreSamplingOptions implements Serializable, Cloneable { @Override public String toString() { return "ScoreSamplingOptions [numThreads=" + numThreads + ", minObjectId=" + minObjectId + ", maxObjectId=" + maxObjectId + ", minNumTerms=" + minNumTerms + ", maxNumTerms=" + maxNumTerms + ", numIterations=" + numIterations ... | ScoreSamplingOptions implements Serializable, Cloneable { @Override public String toString() { return "ScoreSamplingOptions [numThreads=" + numThreads + ", minObjectId=" + minObjectId + ", maxObjectId=" + maxObjectId + ", minNumTerms=" + minNumTerms + ", maxNumTerms=" + maxNumTerms + ", numIterations=" + numIterations ... | ScoreSamplingOptions implements Serializable, Cloneable { @Override public String toString() { return "ScoreSamplingOptions [numThreads=" + numThreads + ", minObjectId=" + minObjectId + ", maxObjectId=" + maxObjectId + ", minNumTerms=" + minNumTerms + ", maxNumTerms=" + maxNumTerms + ", numIterations=" + numIterations ... |
@Test public void test() { Set<TermId> inputIds = Sets.newHashSet(id1); Set<TermId> outputIds = ImmutableSortedSet.copyOf(TermIds.augmentWithAncestors(ontology, inputIds, true)); assertEquals( "[ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000001], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], ... | public static Set<TermId> augmentWithAncestors(ImmutableOntology<?, ?> ontology, Set<TermId> termIds, boolean includeRoot) { termIds.addAll(ontology.getAllAncestorTermIds(termIds, includeRoot)); return termIds; } | TermIds { public static Set<TermId> augmentWithAncestors(ImmutableOntology<?, ?> ontology, Set<TermId> termIds, boolean includeRoot) { termIds.addAll(ontology.getAllAncestorTermIds(termIds, includeRoot)); return termIds; } } | TermIds { public static Set<TermId> augmentWithAncestors(ImmutableOntology<?, ?> ontology, Set<TermId> termIds, boolean includeRoot) { termIds.addAll(ontology.getAllAncestorTermIds(termIds, includeRoot)); return termIds; } } | TermIds { public static Set<TermId> augmentWithAncestors(ImmutableOntology<?, ?> ontology, Set<TermId> termIds, boolean includeRoot) { termIds.addAll(ontology.getAllAncestorTermIds(termIds, includeRoot)); return termIds; } static Set<TermId> augmentWithAncestors(ImmutableOntology<?, ?> ontology,
Set<TermId> term... | TermIds { public static Set<TermId> augmentWithAncestors(ImmutableOntology<?, ?> ontology, Set<TermId> termIds, boolean includeRoot) { termIds.addAll(ontology.getAllAncestorTermIds(termIds, includeRoot)); return termIds; } static Set<TermId> augmentWithAncestors(ImmutableOntology<?, ?> ontology,
Set<TermId> term... |
@Test public void testConstructTermAnnotationToLabelsMap() { Map<TermId, Collection<String>> map = ImmutableSortedMap .copyOf(TermAnnotations.constructTermAnnotationToLabelsMap(ontology, annotations)); assertEquals( "{ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000001]=[two, one], ImmutableTermId [prefi... | public static Map<TermId, Collection<String>> constructTermAnnotationToLabelsMap( Ontology<?, ?> ontology, Collection<? extends TermAnnotation> annotations) { final Map<TermId, Collection<String>> result = new HashMap<>(); for (TermAnnotation anno : annotations) { for (TermId termId : ontology.getAncestorTermIds(anno.g... | TermAnnotations { public static Map<TermId, Collection<String>> constructTermAnnotationToLabelsMap( Ontology<?, ?> ontology, Collection<? extends TermAnnotation> annotations) { final Map<TermId, Collection<String>> result = new HashMap<>(); for (TermAnnotation anno : annotations) { for (TermId termId : ontology.getAnce... | TermAnnotations { public static Map<TermId, Collection<String>> constructTermAnnotationToLabelsMap( Ontology<?, ?> ontology, Collection<? extends TermAnnotation> annotations) { final Map<TermId, Collection<String>> result = new HashMap<>(); for (TermAnnotation anno : annotations) { for (TermId termId : ontology.getAnce... | TermAnnotations { public static Map<TermId, Collection<String>> constructTermAnnotationToLabelsMap( Ontology<?, ?> ontology, Collection<? extends TermAnnotation> annotations) { final Map<TermId, Collection<String>> result = new HashMap<>(); for (TermAnnotation anno : annotations) { for (TermId termId : ontology.getAnce... | TermAnnotations { public static Map<TermId, Collection<String>> constructTermAnnotationToLabelsMap( Ontology<?, ?> ontology, Collection<? extends TermAnnotation> annotations) { final Map<TermId, Collection<String>> result = new HashMap<>(); for (TermAnnotation anno : annotations) { for (TermId termId : ontology.getAnce... |
@Test public void testConstructTermLabelToAnnotationsMap() { Map<String, Collection<TermId>> map = ImmutableSortedMap .copyOf(TermAnnotations.constructTermLabelToAnnotationsMap(ontology, annotations)); assertEquals( "{one=[ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000002], ImmutableTermId [prefix=Immu... | public static Map<String, Collection<TermId>> constructTermLabelToAnnotationsMap( Ontology<?, ?> ontology, Collection<? extends TermAnnotation> annotations) { final Map<String, Collection<TermId>> result = new HashMap<>(); for (TermAnnotation anno : annotations) { for (TermId termId : ontology.getAncestorTermIds(anno.g... | TermAnnotations { public static Map<String, Collection<TermId>> constructTermLabelToAnnotationsMap( Ontology<?, ?> ontology, Collection<? extends TermAnnotation> annotations) { final Map<String, Collection<TermId>> result = new HashMap<>(); for (TermAnnotation anno : annotations) { for (TermId termId : ontology.getAnce... | TermAnnotations { public static Map<String, Collection<TermId>> constructTermLabelToAnnotationsMap( Ontology<?, ?> ontology, Collection<? extends TermAnnotation> annotations) { final Map<String, Collection<TermId>> result = new HashMap<>(); for (TermAnnotation anno : annotations) { for (TermId termId : ontology.getAnce... | TermAnnotations { public static Map<String, Collection<TermId>> constructTermLabelToAnnotationsMap( Ontology<?, ?> ontology, Collection<? extends TermAnnotation> annotations) { final Map<String, Collection<TermId>> result = new HashMap<>(); for (TermAnnotation anno : annotations) { for (TermId termId : ontology.getAnce... | TermAnnotations { public static Map<String, Collection<TermId>> constructTermLabelToAnnotationsMap( Ontology<?, ?> ontology, Collection<? extends TermAnnotation> annotations) { final Map<String, Collection<TermId>> result = new HashMap<>(); for (TermAnnotation anno : annotations) { for (TermId termId : ontology.getAnce... |
@Test public void testComparable() { assertEquals(0, termId.compareTo(termId)); assertThat(termId.compareTo(termId2), lessThan(0)); assertThat(termId2.compareTo(termId), greaterThan(0)); } | @Override public int compareTo(TermId that) { return ComparisonChain.start().compare(this.getPrefix(), that.getPrefix()) .compare(this.getId(), that.getId()).result(); } | ImmutableTermId implements TermId { @Override public int compareTo(TermId that) { return ComparisonChain.start().compare(this.getPrefix(), that.getPrefix()) .compare(this.getId(), that.getId()).result(); } } | ImmutableTermId implements TermId { @Override public int compareTo(TermId that) { return ComparisonChain.start().compare(this.getPrefix(), that.getPrefix()) .compare(this.getId(), that.getId()).result(); } ImmutableTermId(TermPrefix prefix, String id); } | ImmutableTermId implements TermId { @Override public int compareTo(TermId that) { return ComparisonChain.start().compare(this.getPrefix(), that.getPrefix()) .compare(this.getId(), that.getId()).result(); } ImmutableTermId(TermPrefix prefix, String id); static ImmutableTermId constructWithPrefix(String termIdString); @O... | ImmutableTermId implements TermId { @Override public int compareTo(TermId that) { return ComparisonChain.start().compare(this.getPrefix(), that.getPrefix()) .compare(this.getId(), that.getId()).result(); } ImmutableTermId(TermPrefix prefix, String id); static ImmutableTermId constructWithPrefix(String termIdString); @O... |
@Test public void testEquals() { assertTrue(termId.equals(termId)); assertFalse(termId.equals(termId2)); } | @Override public boolean equals(Object obj) { if (this == obj) { return true; } else if (obj instanceof TermId) { final TermId that = (TermId) obj; return this.prefix.equals(that.getPrefix()) && (this.id.equals(that.getId())); } else { return false; } } | ImmutableTermId implements TermId { @Override public boolean equals(Object obj) { if (this == obj) { return true; } else if (obj instanceof TermId) { final TermId that = (TermId) obj; return this.prefix.equals(that.getPrefix()) && (this.id.equals(that.getId())); } else { return false; } } } | ImmutableTermId implements TermId { @Override public boolean equals(Object obj) { if (this == obj) { return true; } else if (obj instanceof TermId) { final TermId that = (TermId) obj; return this.prefix.equals(that.getPrefix()) && (this.id.equals(that.getId())); } else { return false; } } ImmutableTermId(TermPrefix pre... | ImmutableTermId implements TermId { @Override public boolean equals(Object obj) { if (this == obj) { return true; } else if (obj instanceof TermId) { final TermId that = (TermId) obj; return this.prefix.equals(that.getPrefix()) && (this.id.equals(that.getId())); } else { return false; } } ImmutableTermId(TermPrefix pre... | ImmutableTermId implements TermId { @Override public boolean equals(Object obj) { if (this == obj) { return true; } else if (obj instanceof TermId) { final TermId that = (TermId) obj; return this.prefix.equals(that.getPrefix()) && (this.id.equals(that.getId())); } else { return false; } } ImmutableTermId(TermPrefix pre... |
@Test public void testToString() { assertEquals("ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000001]", termId.toString()); } | @Override public String toString() { return "ImmutableTermId [prefix=" + prefix + ", id=" + id + "]"; } | ImmutableTermId implements TermId { @Override public String toString() { return "ImmutableTermId [prefix=" + prefix + ", id=" + id + "]"; } } | ImmutableTermId implements TermId { @Override public String toString() { return "ImmutableTermId [prefix=" + prefix + ", id=" + id + "]"; } ImmutableTermId(TermPrefix prefix, String id); } | ImmutableTermId implements TermId { @Override public String toString() { return "ImmutableTermId [prefix=" + prefix + ", id=" + id + "]"; } ImmutableTermId(TermPrefix prefix, String id); static ImmutableTermId constructWithPrefix(String termIdString); @Override int compareTo(TermId that); @Override TermPrefix getPrefix... | ImmutableTermId implements TermId { @Override public String toString() { return "ImmutableTermId [prefix=" + prefix + ", id=" + id + "]"; } ImmutableTermId(TermPrefix prefix, String id); static ImmutableTermId constructWithPrefix(String termIdString); @Override int compareTo(TermId that); @Override TermPrefix getPrefix... |
@Test public void testComparable() { assertEquals(0, termPrefix.compareTo(termPrefix)); assertThat(termPrefix.compareTo(termPrefix2), greaterThan(0)); assertThat(termPrefix2.compareTo(termPrefix), lessThan(0)); } | @Override public int compareTo(TermPrefix o) { if (this == o) { return 0; } else { return value.compareTo(o.getValue()); } } | ImmutableTermPrefix implements TermPrefix { @Override public int compareTo(TermPrefix o) { if (this == o) { return 0; } else { return value.compareTo(o.getValue()); } } } | ImmutableTermPrefix implements TermPrefix { @Override public int compareTo(TermPrefix o) { if (this == o) { return 0; } else { return value.compareTo(o.getValue()); } } ImmutableTermPrefix(String value); } | ImmutableTermPrefix implements TermPrefix { @Override public int compareTo(TermPrefix o) { if (this == o) { return 0; } else { return value.compareTo(o.getValue()); } } ImmutableTermPrefix(String value); @Override int compareTo(TermPrefix o); @Override String getValue(); @Override String toString(); @Override int hashC... | ImmutableTermPrefix implements TermPrefix { @Override public int compareTo(TermPrefix o) { if (this == o) { return 0; } else { return value.compareTo(o.getValue()); } } ImmutableTermPrefix(String value); @Override int compareTo(TermPrefix o); @Override String getValue(); @Override String toString(); @Override int hashC... |
@Test public void testQueryFunctions() { assertEquals("HP", termPrefix.getValue()); } | @Override public String getValue() { return value; } | ImmutableTermPrefix implements TermPrefix { @Override public String getValue() { return value; } } | ImmutableTermPrefix implements TermPrefix { @Override public String getValue() { return value; } ImmutableTermPrefix(String value); } | ImmutableTermPrefix implements TermPrefix { @Override public String getValue() { return value; } ImmutableTermPrefix(String value); @Override int compareTo(TermPrefix o); @Override String getValue(); @Override String toString(); @Override int hashCode(); @Override boolean equals(Object obj); } | ImmutableTermPrefix implements TermPrefix { @Override public String getValue() { return value; } ImmutableTermPrefix(String value); @Override int compareTo(TermPrefix o); @Override String getValue(); @Override String toString(); @Override int hashCode(); @Override boolean equals(Object obj); } |
@Test public void testToString() { assertEquals("ImmutableTermPrefix [value=HP]", termPrefix.toString()); } | @Override public String toString() { return "ImmutableTermPrefix [value=" + value + "]"; } | ImmutableTermPrefix implements TermPrefix { @Override public String toString() { return "ImmutableTermPrefix [value=" + value + "]"; } } | ImmutableTermPrefix implements TermPrefix { @Override public String toString() { return "ImmutableTermPrefix [value=" + value + "]"; } ImmutableTermPrefix(String value); } | ImmutableTermPrefix implements TermPrefix { @Override public String toString() { return "ImmutableTermPrefix [value=" + value + "]"; } ImmutableTermPrefix(String value); @Override int compareTo(TermPrefix o); @Override String getValue(); @Override String toString(); @Override int hashCode(); @Override boolean equals(Ob... | ImmutableTermPrefix implements TermPrefix { @Override public String toString() { return "ImmutableTermPrefix [value=" + value + "]"; } ImmutableTermPrefix(String value); @Override int compareTo(TermPrefix o); @Override String getValue(); @Override String toString(); @Override int hashCode(); @Override boolean equals(Ob... |
@Test @SuppressWarnings("unchecked") public void testEquals() { assertTrue(edge.equals(edge)); ImmutableEdge<Integer> e2 = (ImmutableEdge<Integer>) edge.clone(); assertTrue(edge.equals(e2)); ImmutableEdge<Integer> e3 = ImmutableEdge.construct(3, 2, 1); assertFalse(edge.equals(e3)); ImmutableEdge<Integer> e4 = Immutable... | @Override public boolean equals(Object obj) { if (this == obj) { return true; } if (obj == null) { return false; } if (getClass() != obj.getClass()) { return false; } @SuppressWarnings("unchecked") ImmutableEdge<V> other = (ImmutableEdge<V>) obj; if (dest == null) { if (other.dest != null) { return false; } } else if (... | ImmutableEdge implements Edge<V> { @Override public boolean equals(Object obj) { if (this == obj) { return true; } if (obj == null) { return false; } if (getClass() != obj.getClass()) { return false; } @SuppressWarnings("unchecked") ImmutableEdge<V> other = (ImmutableEdge<V>) obj; if (dest == null) { if (other.dest != ... | ImmutableEdge implements Edge<V> { @Override public boolean equals(Object obj) { if (this == obj) { return true; } if (obj == null) { return false; } if (getClass() != obj.getClass()) { return false; } @SuppressWarnings("unchecked") ImmutableEdge<V> other = (ImmutableEdge<V>) obj; if (dest == null) { if (other.dest != ... | ImmutableEdge implements Edge<V> { @Override public boolean equals(Object obj) { if (this == obj) { return true; } if (obj == null) { return false; } if (getClass() != obj.getClass()) { return false; } @SuppressWarnings("unchecked") ImmutableEdge<V> other = (ImmutableEdge<V>) obj; if (dest == null) { if (other.dest != ... | ImmutableEdge implements Edge<V> { @Override public boolean equals(Object obj) { if (this == obj) { return true; } if (obj == null) { return false; } if (getClass() != obj.getClass()) { return false; } @SuppressWarnings("unchecked") ImmutableEdge<V> other = (ImmutableEdge<V>) obj; if (dest == null) { if (other.dest != ... |
@Test public void testComputeSimilarities() { assertEquals(1.0, similarity.computeScore( Lists.newArrayList(ImmutableTermId.constructWithPrefix("HP:0000008"), ImmutableTermId.constructWithPrefix("HP:0000009")), Lists.newArrayList(ImmutableTermId.constructWithPrefix("HP:0000008"))), 0.01); assertEquals(1.0, similarity.c... | @Override public double computeScore(Collection<TermId> query, Collection<TermId> target) { return Sets.intersection(Sets.newHashSet(query), Sets.newHashSet(target)).size(); } | SimpleFeatureVectorSimilarity implements Similarity { @Override public double computeScore(Collection<TermId> query, Collection<TermId> target) { return Sets.intersection(Sets.newHashSet(query), Sets.newHashSet(target)).size(); } } | SimpleFeatureVectorSimilarity implements Similarity { @Override public double computeScore(Collection<TermId> query, Collection<TermId> target) { return Sets.intersection(Sets.newHashSet(query), Sets.newHashSet(target)).size(); } } | SimpleFeatureVectorSimilarity implements Similarity { @Override public double computeScore(Collection<TermId> query, Collection<TermId> target) { return Sets.intersection(Sets.newHashSet(query), Sets.newHashSet(target)).size(); } @Override String getName(); @Override String getParameters(); @Override boolean isSymmetr... | SimpleFeatureVectorSimilarity implements Similarity { @Override public double computeScore(Collection<TermId> query, Collection<TermId> target) { return Sets.intersection(Sets.newHashSet(query), Sets.newHashSet(target)).size(); } @Override String getName(); @Override String getParameters(); @Override boolean isSymmetr... |
@Test public void testComputeSimilarities() { assertEquals(0.25, similarity.computeScore(Lists.newArrayList(idBeet), Lists.newArrayList(idCarrot)), 0.01); assertEquals(0.66, similarity.computeScore(Lists.newArrayList(idBlueCarrot), Lists.newArrayList(idCarrot)), 0.01); assertEquals(0.33, similarity.computeScore(Lists.n... | @Override public double computeScore(Collection<TermId> query, Collection<TermId> target) { final Set<TermId> termIdsQuery = ontology.getAllAncestorTermIds(query, false); final Set<TermId> termIdsTarget = ontology.getAllAncestorTermIds(target, false); double intersectionSize = Sets.intersection(termIdsQuery, termIdsTar... | JaccardSimilarity implements
Similarity { @Override public double computeScore(Collection<TermId> query, Collection<TermId> target) { final Set<TermId> termIdsQuery = ontology.getAllAncestorTermIds(query, false); final Set<TermId> termIdsTarget = ontology.getAllAncestorTermIds(target, false); double intersectionS... | JaccardSimilarity implements
Similarity { @Override public double computeScore(Collection<TermId> query, Collection<TermId> target) { final Set<TermId> termIdsQuery = ontology.getAllAncestorTermIds(query, false); final Set<TermId> termIdsTarget = ontology.getAllAncestorTermIds(target, false); double intersectionS... | JaccardSimilarity implements
Similarity { @Override public double computeScore(Collection<TermId> query, Collection<TermId> target) { final Set<TermId> termIdsQuery = ontology.getAllAncestorTermIds(query, false); final Set<TermId> termIdsTarget = ontology.getAllAncestorTermIds(target, false); double intersectionS... | JaccardSimilarity implements
Similarity { @Override public double computeScore(Collection<TermId> query, Collection<TermId> target) { final Set<TermId> termIdsQuery = ontology.getAllAncestorTermIds(query, false); final Set<TermId> termIdsTarget = ontology.getAllAncestorTermIds(target, false); double intersectionS... |
@Test public void testComputeSimilarities() { assertEquals(0.408, similarity.computeScore(Lists.newArrayList(idBeet), Lists.newArrayList(idCarrot)), 0.01); assertEquals(0.816, similarity.computeScore(Lists.newArrayList(idBlueCarrot), Lists.newArrayList(idCarrot)), 0.01); assertEquals(0.50, similarity.computeScore(Lists... | @Override public double computeScore(Collection<TermId> query, Collection<TermId> target) { final Set<TermId> termIdsQuery = ontology.getAllAncestorTermIds(query, false); final Set<TermId> termIdsTarget = ontology.getAllAncestorTermIds(target, false); return Sets.intersection(termIdsQuery, termIdsTarget).size() / (Math... | CosineSimilarity implements Similarity { @Override public double computeScore(Collection<TermId> query, Collection<TermId> target) { final Set<TermId> termIdsQuery = ontology.getAllAncestorTermIds(query, false); final Set<TermId> termIdsTarget = ontology.getAllAncestorTermIds(target, false); return Sets.intersection(te... | CosineSimilarity implements Similarity { @Override public double computeScore(Collection<TermId> query, Collection<TermId> target) { final Set<TermId> termIdsQuery = ontology.getAllAncestorTermIds(query, false); final Set<TermId> termIdsTarget = ontology.getAllAncestorTermIds(target, false); return Sets.intersection(te... | CosineSimilarity implements Similarity { @Override public double computeScore(Collection<TermId> query, Collection<TermId> target) { final Set<TermId> termIdsQuery = ontology.getAllAncestorTermIds(query, false); final Set<TermId> termIdsTarget = ontology.getAllAncestorTermIds(target, false); return Sets.intersection(te... | CosineSimilarity implements Similarity { @Override public double computeScore(Collection<TermId> query, Collection<TermId> target) { final Set<TermId> termIdsQuery = ontology.getAllAncestorTermIds(query, false); final Set<TermId> termIdsTarget = ontology.getAllAncestorTermIds(target, false); return Sets.intersection(te... |
@Test public void testComputeSimilarities() { assertEquals(0.0, similarity.computeScore(idBeet, idCarrot), 0.01); assertEquals(0.405, similarity.computeScore(idBlueCarrot, idCarrot), 0.01); assertEquals(0.0, similarity.computeScore(idPumpkin, idCarrot), 0.01); assertEquals(0.0, similarity.computeScore(idLeafVegetable, ... | @Override public double computeScore(TermId query, TermId target) { return precomputedScores.get(query, target); } | PrecomputingPairwiseResnikSimilarity implements
PairwiseSimilarity,
Serializable { @Override public double computeScore(TermId query, TermId target) { return precomputedScores.get(query, target); } } | PrecomputingPairwiseResnikSimilarity implements
PairwiseSimilarity,
Serializable { @Override public double computeScore(TermId query, TermId target) { return precomputedScores.get(query, target); } PrecomputingPairwiseResnikSimilarity(Ontology<T, R> ontology, Map<TermId, Double> termToIc,
int numThrea... | PrecomputingPairwiseResnikSimilarity implements
PairwiseSimilarity,
Serializable { @Override public double computeScore(TermId query, TermId target) { return precomputedScores.get(query, target); } PrecomputingPairwiseResnikSimilarity(Ontology<T, R> ontology, Map<TermId, Double> termToIc,
int numThrea... | PrecomputingPairwiseResnikSimilarity implements
PairwiseSimilarity,
Serializable { @Override public double computeScore(TermId query, TermId target) { return precomputedScores.get(query, target); } PrecomputingPairwiseResnikSimilarity(Ontology<T, R> ontology, Map<TermId, Double> termToIc,
int numThrea... |
@Test public void testComputeSimilarities() { assertEquals(0.5, similarity.computeScore(Lists.newArrayList(idBeet), Lists.newArrayList(idCarrot)), 0.01); assertEquals(1.0, similarity.computeScore(Lists.newArrayList(idBlueCarrot), Lists.newArrayList(idCarrot)), 0.01); assertEquals(0.5, similarity.computeScore(Lists.newA... | @Override public double computeScore(Collection<TermId> query, Collection<TermId> target) { final Set<TermId> termIdsQuery = ontology.getAllAncestorTermIds(query, false); final Set<TermId> termIdsTarget = ontology.getAllAncestorTermIds(target, false); double overlap = Sets.intersection(termIdsQuery, termIdsTarget).size... | TermOverlapSimilarity implements
Similarity { @Override public double computeScore(Collection<TermId> query, Collection<TermId> target) { final Set<TermId> termIdsQuery = ontology.getAllAncestorTermIds(query, false); final Set<TermId> termIdsTarget = ontology.getAllAncestorTermIds(target, false); double overlap =... | TermOverlapSimilarity implements
Similarity { @Override public double computeScore(Collection<TermId> query, Collection<TermId> target) { final Set<TermId> termIdsQuery = ontology.getAllAncestorTermIds(query, false); final Set<TermId> termIdsTarget = ontology.getAllAncestorTermIds(target, false); double overlap =... | TermOverlapSimilarity implements
Similarity { @Override public double computeScore(Collection<TermId> query, Collection<TermId> target) { final Set<TermId> termIdsQuery = ontology.getAllAncestorTermIds(query, false); final Set<TermId> termIdsTarget = ontology.getAllAncestorTermIds(target, false); double overlap =... | TermOverlapSimilarity implements
Similarity { @Override public double computeScore(Collection<TermId> query, Collection<TermId> target) { final Set<TermId> termIdsQuery = ontology.getAllAncestorTermIds(query, false); final Set<TermId> termIdsTarget = ontology.getAllAncestorTermIds(target, false); double overlap =... |
@Test public void testComputeSimilarities() { assertEquals(0.0, similarity.computeScore(idBeet, idCarrot), 0.01); assertEquals(0.405, similarity.computeScore(idBlueCarrot, idCarrot), 0.01); assertEquals(0.0, similarity.computeScore(idPumpkin, idCarrot), 0.01); assertEquals(0.0, similarity.computeScore(idLeafVegetable, ... | @Override public double computeScore(TermId query, TermId target) { return computeScoreImpl(query, target); } | PairwiseResnikSimilarity implements
PairwiseSimilarity { @Override public double computeScore(TermId query, TermId target) { return computeScoreImpl(query, target); } } | PairwiseResnikSimilarity implements
PairwiseSimilarity { @Override public double computeScore(TermId query, TermId target) { return computeScoreImpl(query, target); } protected PairwiseResnikSimilarity(); PairwiseResnikSimilarity(Ontology<T, R> ontology, Map<TermId, Double> termToIc); } | PairwiseResnikSimilarity implements
PairwiseSimilarity { @Override public double computeScore(TermId query, TermId target) { return computeScoreImpl(query, target); } protected PairwiseResnikSimilarity(); PairwiseResnikSimilarity(Ontology<T, R> ontology, Map<TermId, Double> termToIc); double computeScoreImpl(Te... | PairwiseResnikSimilarity implements
PairwiseSimilarity { @Override public double computeScore(TermId query, TermId target) { return computeScoreImpl(query, target); } protected PairwiseResnikSimilarity(); PairwiseResnikSimilarity(Ontology<T, R> ontology, Map<TermId, Double> termToIc); double computeScoreImpl(Te... |
@Test public void testQueries() { assertEquals("Resnik similarity", similarity.getName()); assertEquals(true, similarity.isSymmetric()); assertEquals("{symmetric: true}", similarity.getParameters()); } | @Override public String getName() { return "Resnik similarity"; } | ResnikSimilarity extends AbstractCommonAncestorSimilarity<T, R> { @Override public String getName() { return "Resnik similarity"; } } | ResnikSimilarity extends AbstractCommonAncestorSimilarity<T, R> { @Override public String getName() { return "Resnik similarity"; } ResnikSimilarity(Ontology<T, R> ontology, Map<TermId, Double> termToIc,
boolean symmetric); ResnikSimilarity(PairwiseSimilarity pairwiseSimilarity, boolean symmetric); } | ResnikSimilarity extends AbstractCommonAncestorSimilarity<T, R> { @Override public String getName() { return "Resnik similarity"; } ResnikSimilarity(Ontology<T, R> ontology, Map<TermId, Double> termToIc,
boolean symmetric); ResnikSimilarity(PairwiseSimilarity pairwiseSimilarity, boolean symmetric); @Override Str... | ResnikSimilarity extends AbstractCommonAncestorSimilarity<T, R> { @Override public String getName() { return "Resnik similarity"; } ResnikSimilarity(Ontology<T, R> ontology, Map<TermId, Double> termToIc,
boolean symmetric); ResnikSimilarity(PairwiseSimilarity pairwiseSimilarity, boolean symmetric); @Override Str... |
@Test public void testParseHpoHead() throws IOException { final HpoOboParser parser = new HpoOboParser(hpoHeadFile, true); final HpoOntology ontology = parser.parse(); assertEquals( "ImmutableDirectedGraph [edgeLists={ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000001]=ImmutableVertexEdgeList [inEdges=[... | @SuppressWarnings("unchecked") public HpoOntology parse() throws IOException { final OboImmutableOntologyLoader<HpoTerm, HpoTermRelation> loader = new OboImmutableOntologyLoader<>(oboFile, debug); final HpoOboFactory factory = new HpoOboFactory(); final ImmutableOntology<HpoTerm, HpoTermRelation> o = loader.load(factor... | HpoOboParser implements OntologyOboParser<HpoOntology> { @SuppressWarnings("unchecked") public HpoOntology parse() throws IOException { final OboImmutableOntologyLoader<HpoTerm, HpoTermRelation> loader = new OboImmutableOntologyLoader<>(oboFile, debug); final HpoOboFactory factory = new HpoOboFactory(); final Immutable... | HpoOboParser implements OntologyOboParser<HpoOntology> { @SuppressWarnings("unchecked") public HpoOntology parse() throws IOException { final OboImmutableOntologyLoader<HpoTerm, HpoTermRelation> loader = new OboImmutableOntologyLoader<>(oboFile, debug); final HpoOboFactory factory = new HpoOboFactory(); final Immutable... | HpoOboParser implements OntologyOboParser<HpoOntology> { @SuppressWarnings("unchecked") public HpoOntology parse() throws IOException { final OboImmutableOntologyLoader<HpoTerm, HpoTermRelation> loader = new OboImmutableOntologyLoader<>(oboFile, debug); final HpoOboFactory factory = new HpoOboFactory(); final Immutable... | HpoOboParser implements OntologyOboParser<HpoOntology> { @SuppressWarnings("unchecked") public HpoOntology parse() throws IOException { final OboImmutableOntologyLoader<HpoTerm, HpoTermRelation> loader = new OboImmutableOntologyLoader<>(oboFile, debug); final HpoOboFactory factory = new HpoOboFactory(); final Immutable... |
@Test public void testParseHpoHead() throws IOException { final GoOboParser parser = new GoOboParser(goHeadFile, true); final GoOntology ontology = parser.parse(); assertEquals( "ImmutableDirectedGraph [edgeLists={ImmutableTermId [prefix=ImmutableTermPrefix [value=GO], id=0000000]=ImmutableVertexEdgeList [inEdges=[Immu... | @SuppressWarnings("unchecked") public GoOntology parse() throws IOException { final OboImmutableOntologyLoader<GoTerm, GoTermRelation> loader = new OboImmutableOntologyLoader<>(oboFile, debug); final GoOboFactory factory = new GoOboFactory(); final ImmutableOntology<GoTerm, GoTermRelation> o = loader.load(factory); ret... | GoOboParser implements OntologyOboParser<GoOntology> { @SuppressWarnings("unchecked") public GoOntology parse() throws IOException { final OboImmutableOntologyLoader<GoTerm, GoTermRelation> loader = new OboImmutableOntologyLoader<>(oboFile, debug); final GoOboFactory factory = new GoOboFactory(); final ImmutableOntolog... | GoOboParser implements OntologyOboParser<GoOntology> { @SuppressWarnings("unchecked") public GoOntology parse() throws IOException { final OboImmutableOntologyLoader<GoTerm, GoTermRelation> loader = new OboImmutableOntologyLoader<>(oboFile, debug); final GoOboFactory factory = new GoOboFactory(); final ImmutableOntolog... | GoOboParser implements OntologyOboParser<GoOntology> { @SuppressWarnings("unchecked") public GoOntology parse() throws IOException { final OboImmutableOntologyLoader<GoTerm, GoTermRelation> loader = new OboImmutableOntologyLoader<>(oboFile, debug); final GoOboFactory factory = new GoOboFactory(); final ImmutableOntolog... | GoOboParser implements OntologyOboParser<GoOntology> { @SuppressWarnings("unchecked") public GoOntology parse() throws IOException { final OboImmutableOntologyLoader<GoTerm, GoTermRelation> loader = new OboImmutableOntologyLoader<>(oboFile, debug); final GoOboFactory factory = new GoOboFactory(); final ImmutableOntolog... |
@Test public void testParseUberphenoHead() throws IOException { final UberphenoOboParser parser = new UberphenoOboParser(uberphenoHeadFile, true); final UberphenoOntology ontology = parser.parse(); assertEquals( "ImmutableDirectedGraph [edgeLists={ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000001]=Immu... | @SuppressWarnings("unchecked") @Override public UberphenoOntology parse() throws IOException { final OboImmutableOntologyLoader<UberphenoTerm, UberphenoTermRelation> loader = new OboImmutableOntologyLoader<>(oboFile, debug); final UberphenoOboFactory factory = new UberphenoOboFactory(); final ImmutableOntology<Uberphen... | UberphenoOboParser implements OntologyOboParser<UberphenoOntology> { @SuppressWarnings("unchecked") @Override public UberphenoOntology parse() throws IOException { final OboImmutableOntologyLoader<UberphenoTerm, UberphenoTermRelation> loader = new OboImmutableOntologyLoader<>(oboFile, debug); final UberphenoOboFactory ... | UberphenoOboParser implements OntologyOboParser<UberphenoOntology> { @SuppressWarnings("unchecked") @Override public UberphenoOntology parse() throws IOException { final OboImmutableOntologyLoader<UberphenoTerm, UberphenoTermRelation> loader = new OboImmutableOntologyLoader<>(oboFile, debug); final UberphenoOboFactory ... | UberphenoOboParser implements OntologyOboParser<UberphenoOntology> { @SuppressWarnings("unchecked") @Override public UberphenoOntology parse() throws IOException { final OboImmutableOntologyLoader<UberphenoTerm, UberphenoTermRelation> loader = new OboImmutableOntologyLoader<>(oboFile, debug); final UberphenoOboFactory ... | UberphenoOboParser implements OntologyOboParser<UberphenoOntology> { @SuppressWarnings("unchecked") @Override public UberphenoOntology parse() throws IOException { final OboImmutableOntologyLoader<UberphenoTerm, UberphenoTermRelation> loader = new OboImmutableOntologyLoader<>(oboFile, debug); final UberphenoOboFactory ... |
@Test public void testBuilder() { Builder<Integer, ImmutableEdge<Integer>> builder = ImmutableDirectedGraph.builder(new ImmutableEdge.Factory<Integer>()); for (int i = 1; i <= 5; ++i) { builder.addVertex(i); } for (int i = 2; i <= 4; ++i) { builder.addEdge(1, i); builder.addEdge(i, 5); } ImmutableDirectedGraph<Integer,... | public static <V extends Comparable<V>, E extends ImmutableEdge<V>> Builder<V, E> builder(final Edge.Factory<V, E> edgeFactory) { return new Builder<V, E>(edgeFactory); } | ImmutableDirectedGraph implements
DirectedGraph<V, E> { public static <V extends Comparable<V>, E extends ImmutableEdge<V>> Builder<V, E> builder(final Edge.Factory<V, E> edgeFactory) { return new Builder<V, E>(edgeFactory); } } | ImmutableDirectedGraph implements
DirectedGraph<V, E> { public static <V extends Comparable<V>, E extends ImmutableEdge<V>> Builder<V, E> builder(final Edge.Factory<V, E> edgeFactory) { return new Builder<V, E>(edgeFactory); } private ImmutableDirectedGraph(final Collection<V> vertices, final Collection<E> edges... | ImmutableDirectedGraph implements
DirectedGraph<V, E> { public static <V extends Comparable<V>, E extends ImmutableEdge<V>> Builder<V, E> builder(final Edge.Factory<V, E> edgeFactory) { return new Builder<V, E>(edgeFactory); } private ImmutableDirectedGraph(final Collection<V> vertices, final Collection<E> edges... | ImmutableDirectedGraph implements
DirectedGraph<V, E> { public static <V extends Comparable<V>, E extends ImmutableEdge<V>> Builder<V, E> builder(final Edge.Factory<V, E> edgeFactory) { return new Builder<V, E>(edgeFactory); } private ImmutableDirectedGraph(final Collection<V> vertices, final Collection<E> edges... |
@Test public void testParseHpoHead() throws IOException { final MpoOboParser parser = new MpoOboParser(mpoHeadFile, true); final MpoOntology ontology = parser.parse(); assertEquals( "ImmutableDirectedGraph [edgeLists={ImmutableTermId [prefix=ImmutableTermPrefix [value=MP], id=0000001]=ImmutableVertexEdgeList [inEdges=[... | @SuppressWarnings("unchecked") public MpoOntology parse() throws IOException { final OboImmutableOntologyLoader<MpoTerm, MpoTermRelation> loader = new OboImmutableOntologyLoader<>(oboFile, debug); final MpoOboFactory factory = new MpoOboFactory(); final ImmutableOntology<MpoTerm, MpoTermRelation> o = loader.load(factor... | MpoOboParser implements OntologyOboParser<MpoOntology> { @SuppressWarnings("unchecked") public MpoOntology parse() throws IOException { final OboImmutableOntologyLoader<MpoTerm, MpoTermRelation> loader = new OboImmutableOntologyLoader<>(oboFile, debug); final MpoOboFactory factory = new MpoOboFactory(); final Immutable... | MpoOboParser implements OntologyOboParser<MpoOntology> { @SuppressWarnings("unchecked") public MpoOntology parse() throws IOException { final OboImmutableOntologyLoader<MpoTerm, MpoTermRelation> loader = new OboImmutableOntologyLoader<>(oboFile, debug); final MpoOboFactory factory = new MpoOboFactory(); final Immutable... | MpoOboParser implements OntologyOboParser<MpoOntology> { @SuppressWarnings("unchecked") public MpoOntology parse() throws IOException { final OboImmutableOntologyLoader<MpoTerm, MpoTermRelation> loader = new OboImmutableOntologyLoader<>(oboFile, debug); final MpoOboFactory factory = new MpoOboFactory(); final Immutable... | MpoOboParser implements OntologyOboParser<MpoOntology> { @SuppressWarnings("unchecked") public MpoOntology parse() throws IOException { final OboImmutableOntologyLoader<MpoTerm, MpoTermRelation> loader = new OboImmutableOntologyLoader<>(oboFile, debug); final MpoOboFactory factory = new MpoOboFactory(); final Immutable... |
@Test public void testAllInOneParsing() { final OboFile oboFile = parser.parseString(MINI_OBO); assertEquals("OBOFile [header=Header [entries=[StanzaEntryFormatVersion [value=1.2, " + "getType()=FORMAT_VERSION, getTrailingModifier()=null, getComment()=null]], " + "entryByType={FORMAT_VERSION=[StanzaEntryFormatVersion [... | public OboFile parseString(String oboString) { final HelperListener helper = new HelperListener(); parseString(oboString, helper); return new OboFile(helper.getHeader(), helper.getStanzas()); } | OboParser { public OboFile parseString(String oboString) { final HelperListener helper = new HelperListener(); parseString(oboString, helper); return new OboFile(helper.getHeader(), helper.getStanzas()); } } | OboParser { public OboFile parseString(String oboString) { final HelperListener helper = new HelperListener(); parseString(oboString, helper); return new OboFile(helper.getHeader(), helper.getStanzas()); } OboParser(); OboParser(boolean debug); } | OboParser { public OboFile parseString(String oboString) { final HelperListener helper = new HelperListener(); parseString(oboString, helper); return new OboFile(helper.getHeader(), helper.getStanzas()); } OboParser(); OboParser(boolean debug); OboFile parseFile(File file); void parseFile(File file, OboParseResultList... | OboParser { public OboFile parseString(String oboString) { final HelperListener helper = new HelperListener(); parseString(oboString, helper); return new OboFile(helper.getHeader(), helper.getStanzas()); } OboParser(); OboParser(boolean debug); OboFile parseFile(File file); void parseFile(File file, OboParseResultList... |
@Test public void testEventBasedParsing() { final TestListener listener = new TestListener(); parser.parseString(MINI_OBO, listener); assertEquals("Header [entries=[StanzaEntryFormatVersion [value=1.2, getType()=FORMAT_VERSION, " + "getTrailingModifier()=null, getComment()=null]], entryByType={FORMAT_VERSION=" + "[Stan... | public OboFile parseString(String oboString) { final HelperListener helper = new HelperListener(); parseString(oboString, helper); return new OboFile(helper.getHeader(), helper.getStanzas()); } | OboParser { public OboFile parseString(String oboString) { final HelperListener helper = new HelperListener(); parseString(oboString, helper); return new OboFile(helper.getHeader(), helper.getStanzas()); } } | OboParser { public OboFile parseString(String oboString) { final HelperListener helper = new HelperListener(); parseString(oboString, helper); return new OboFile(helper.getHeader(), helper.getStanzas()); } OboParser(); OboParser(boolean debug); } | OboParser { public OboFile parseString(String oboString) { final HelperListener helper = new HelperListener(); parseString(oboString, helper); return new OboFile(helper.getHeader(), helper.getStanzas()); } OboParser(); OboParser(boolean debug); OboFile parseFile(File file); void parseFile(File file, OboParseResultList... | OboParser { public OboFile parseString(String oboString) { final HelperListener helper = new HelperListener(); parseString(oboString, helper); return new OboFile(helper.getHeader(), helper.getStanzas()); } OboParser(); OboParser(boolean debug); OboFile parseFile(File file); void parseFile(File file, OboParseResultList... |
@Test public void testToString() { assertEquals("ImmutableDirectedGraph [edgeLists={1=ImmutableVertexEdgeList " + "[inEdges=[], outEdges=[ImmutableEdge [source=1, dest=2, id=1], " + "ImmutableEdge [source=1, dest=3, id=2], ImmutableEdge [source=1, dest=4, id=3]]], " + "2=ImmutableVertexEdgeList [inEdges=[ImmutableEdge ... | @Override public String toString() { return "ImmutableDirectedGraph [edgeLists=" + ImmutableSortedMap.copyOf(edgeLists) + ", edgeCount=" + edgeCount + "]"; } | ImmutableDirectedGraph implements
DirectedGraph<V, E> { @Override public String toString() { return "ImmutableDirectedGraph [edgeLists=" + ImmutableSortedMap.copyOf(edgeLists) + ", edgeCount=" + edgeCount + "]"; } } | ImmutableDirectedGraph implements
DirectedGraph<V, E> { @Override public String toString() { return "ImmutableDirectedGraph [edgeLists=" + ImmutableSortedMap.copyOf(edgeLists) + ", edgeCount=" + edgeCount + "]"; } private ImmutableDirectedGraph(final Collection<V> vertices, final Collection<E> edges); } | ImmutableDirectedGraph implements
DirectedGraph<V, E> { @Override public String toString() { return "ImmutableDirectedGraph [edgeLists=" + ImmutableSortedMap.copyOf(edgeLists) + ", edgeCount=" + edgeCount + "]"; } private ImmutableDirectedGraph(final Collection<V> vertices, final Collection<E> edges); static Bui... | ImmutableDirectedGraph implements
DirectedGraph<V, E> { @Override public String toString() { return "ImmutableDirectedGraph [edgeLists=" + ImmutableSortedMap.copyOf(edgeLists) + ", edgeCount=" + edgeCount + "]"; } private ImmutableDirectedGraph(final Collection<V> vertices, final Collection<E> edges); static Bui... |
@Test public void testOutEdgeIterator() { Iterator<ImmutableEdge<Integer>> it = graph.outEdgeIterator(1); List<ImmutableEdge<Integer>> edges = new ArrayList<>(); while (it.hasNext()) { edges.add(it.next()); } assertEquals("[ImmutableEdge [source=1, dest=2, id=1], ImmutableEdge [source=1, dest=3, id=2], " + "ImmutableEd... | @Override public Iterator<E> outEdgeIterator(V v) { return edgeLists.get(v).getOutEdges().iterator(); } | ImmutableDirectedGraph implements
DirectedGraph<V, E> { @Override public Iterator<E> outEdgeIterator(V v) { return edgeLists.get(v).getOutEdges().iterator(); } } | ImmutableDirectedGraph implements
DirectedGraph<V, E> { @Override public Iterator<E> outEdgeIterator(V v) { return edgeLists.get(v).getOutEdges().iterator(); } private ImmutableDirectedGraph(final Collection<V> vertices, final Collection<E> edges); } | ImmutableDirectedGraph implements
DirectedGraph<V, E> { @Override public Iterator<E> outEdgeIterator(V v) { return edgeLists.get(v).getOutEdges().iterator(); } private ImmutableDirectedGraph(final Collection<V> vertices, final Collection<E> edges); static Builder<V, E> builder(final Edge.Factory<V, E> edgeFactor... | ImmutableDirectedGraph implements
DirectedGraph<V, E> { @Override public Iterator<E> outEdgeIterator(V v) { return edgeLists.get(v).getOutEdges().iterator(); } private ImmutableDirectedGraph(final Collection<V> vertices, final Collection<E> edges); static Builder<V, E> builder(final Edge.Factory<V, E> edgeFactor... |
@Test public void testInEdgeIterator() { Iterator<ImmutableEdge<Integer>> it = graph.inEdgeIterator(5); List<ImmutableEdge<Integer>> edges = new ArrayList<>(); while (it.hasNext()) { edges.add(it.next()); } assertEquals("[ImmutableEdge [source=2, dest=5, id=4], ImmutableEdge [source=3, dest=5, id=5], " + "ImmutableEdge... | @Override public Iterator<E> inEdgeIterator(V v) { return edgeLists.get(v).getInEdges().iterator(); } | ImmutableDirectedGraph implements
DirectedGraph<V, E> { @Override public Iterator<E> inEdgeIterator(V v) { return edgeLists.get(v).getInEdges().iterator(); } } | ImmutableDirectedGraph implements
DirectedGraph<V, E> { @Override public Iterator<E> inEdgeIterator(V v) { return edgeLists.get(v).getInEdges().iterator(); } private ImmutableDirectedGraph(final Collection<V> vertices, final Collection<E> edges); } | ImmutableDirectedGraph implements
DirectedGraph<V, E> { @Override public Iterator<E> inEdgeIterator(V v) { return edgeLists.get(v).getInEdges().iterator(); } private ImmutableDirectedGraph(final Collection<V> vertices, final Collection<E> edges); static Builder<V, E> builder(final Edge.Factory<V, E> edgeFactory)... | ImmutableDirectedGraph implements
DirectedGraph<V, E> { @Override public Iterator<E> inEdgeIterator(V v) { return edgeLists.get(v).getInEdges().iterator(); } private ImmutableDirectedGraph(final Collection<V> vertices, final Collection<E> edges); static Builder<V, E> builder(final Edge.Factory<V, E> edgeFactory)... |
@Test public void testViaOutEdgeIterator() { Iterator<Integer> it = graph.viaOutEdgeIterator(1); List<Integer> vertices = new ArrayList<>(); while (it.hasNext()) { vertices.add(it.next()); } assertEquals("[2, 3, 4]", vertices.toString()); } | @Override public Iterator<V> viaOutEdgeIterator(V v) { final Iterator<? extends Edge<V>> iter = outEdgeIterator(v); return new Iterator<V>() { @Override public boolean hasNext() { return iter.hasNext(); } @Override public V next() { return iter.next().getDest(); } @Override public void remove() { throw new UnsupportedO... | ImmutableDirectedGraph implements
DirectedGraph<V, E> { @Override public Iterator<V> viaOutEdgeIterator(V v) { final Iterator<? extends Edge<V>> iter = outEdgeIterator(v); return new Iterator<V>() { @Override public boolean hasNext() { return iter.hasNext(); } @Override public V next() { return iter.next().getDes... | ImmutableDirectedGraph implements
DirectedGraph<V, E> { @Override public Iterator<V> viaOutEdgeIterator(V v) { final Iterator<? extends Edge<V>> iter = outEdgeIterator(v); return new Iterator<V>() { @Override public boolean hasNext() { return iter.hasNext(); } @Override public V next() { return iter.next().getDes... | ImmutableDirectedGraph implements
DirectedGraph<V, E> { @Override public Iterator<V> viaOutEdgeIterator(V v) { final Iterator<? extends Edge<V>> iter = outEdgeIterator(v); return new Iterator<V>() { @Override public boolean hasNext() { return iter.hasNext(); } @Override public V next() { return iter.next().getDes... | ImmutableDirectedGraph implements
DirectedGraph<V, E> { @Override public Iterator<V> viaOutEdgeIterator(V v) { final Iterator<? extends Edge<V>> iter = outEdgeIterator(v); return new Iterator<V>() { @Override public boolean hasNext() { return iter.hasNext(); } @Override public V next() { return iter.next().getDes... |
@Test public void testViaInEdgeIterator() { Iterator<Integer> it = graph.viaInEdgeIterator(5); List<Integer> vertices = new ArrayList<>(); while (it.hasNext()) { vertices.add(it.next()); } assertEquals("[2, 3, 4]", vertices.toString()); } | @Override public Iterator<V> viaInEdgeIterator(V v) { final Iterator<? extends Edge<V>> iter = inEdgeIterator(v); return new Iterator<V>() { @Override public boolean hasNext() { return iter.hasNext(); } @Override public V next() { return iter.next().getSource(); } @Override public void remove() { throw new UnsupportedO... | ImmutableDirectedGraph implements
DirectedGraph<V, E> { @Override public Iterator<V> viaInEdgeIterator(V v) { final Iterator<? extends Edge<V>> iter = inEdgeIterator(v); return new Iterator<V>() { @Override public boolean hasNext() { return iter.hasNext(); } @Override public V next() { return iter.next().getSourc... | ImmutableDirectedGraph implements
DirectedGraph<V, E> { @Override public Iterator<V> viaInEdgeIterator(V v) { final Iterator<? extends Edge<V>> iter = inEdgeIterator(v); return new Iterator<V>() { @Override public boolean hasNext() { return iter.hasNext(); } @Override public V next() { return iter.next().getSourc... | ImmutableDirectedGraph implements
DirectedGraph<V, E> { @Override public Iterator<V> viaInEdgeIterator(V v) { final Iterator<? extends Edge<V>> iter = inEdgeIterator(v); return new Iterator<V>() { @Override public boolean hasNext() { return iter.hasNext(); } @Override public V next() { return iter.next().getSourc... | ImmutableDirectedGraph implements
DirectedGraph<V, E> { @Override public Iterator<V> viaInEdgeIterator(V v) { final Iterator<? extends Edge<V>> iter = inEdgeIterator(v); return new Iterator<V>() { @Override public boolean hasNext() { return iter.hasNext(); } @Override public V next() { return iter.next().getSourc... |
@Test public void testSubGraph() { DirectedGraph<Integer, ImmutableEdge<Integer>> subGraph = graph.subGraph(ImmutableList.of(1, 2, 5)); assertEquals("ImmutableDirectedGraph [edgeLists={1=ImmutableVertexEdgeList [inEdges=[], " + "outEdges=[ImmutableEdge [source=1, dest=2, id=1]]], " + "2=ImmutableVertexEdgeList [inEdges... | @SuppressWarnings("unchecked") @Override public DirectedGraph<V, E> subGraph(Collection<V> vertices) { Set<V> argVertexSet = ImmutableSet.copyOf(vertices); Set<V> vertexSubset = new HashSet<V>(); Iterator<V> vertexIt = vertexIterator(); while (vertexIt.hasNext()) { final V v = vertexIt.next(); if (argVertexSet.contains... | ImmutableDirectedGraph implements
DirectedGraph<V, E> { @SuppressWarnings("unchecked") @Override public DirectedGraph<V, E> subGraph(Collection<V> vertices) { Set<V> argVertexSet = ImmutableSet.copyOf(vertices); Set<V> vertexSubset = new HashSet<V>(); Iterator<V> vertexIt = vertexIterator(); while (vertexIt.hasNe... | ImmutableDirectedGraph implements
DirectedGraph<V, E> { @SuppressWarnings("unchecked") @Override public DirectedGraph<V, E> subGraph(Collection<V> vertices) { Set<V> argVertexSet = ImmutableSet.copyOf(vertices); Set<V> vertexSubset = new HashSet<V>(); Iterator<V> vertexIt = vertexIterator(); while (vertexIt.hasNe... | ImmutableDirectedGraph implements
DirectedGraph<V, E> { @SuppressWarnings("unchecked") @Override public DirectedGraph<V, E> subGraph(Collection<V> vertices) { Set<V> argVertexSet = ImmutableSet.copyOf(vertices); Set<V> vertexSubset = new HashSet<V>(); Iterator<V> vertexIt = vertexIterator(); while (vertexIt.hasNe... | ImmutableDirectedGraph implements
DirectedGraph<V, E> { @SuppressWarnings("unchecked") @Override public DirectedGraph<V, E> subGraph(Collection<V> vertices) { Set<V> argVertexSet = ImmutableSet.copyOf(vertices); Set<V> vertexSubset = new HashSet<V>(); Iterator<V> vertexIt = vertexIterator(); while (vertexIt.hasNe... |
@Test public void controleerDeelnemerProperties() { Deelnemer deelnemer = new Deelnemer(); assertTrue(watches.isWatched(deelnemer)); assertTrue(watches.isWatched(deelnemer, "onderwijsnummer")); assertFalse(watches.isWatched(deelnemer, "id")); } | public boolean isWatched(Entiteit entity) { return list.containsKey(Hibernate.getClass(entity)); } | BronWatchList { public boolean isWatched(Entiteit entity) { return list.containsKey(Hibernate.getClass(entity)); } } | BronWatchList { public boolean isWatched(Entiteit entity) { return list.containsKey(Hibernate.getClass(entity)); } } | BronWatchList { public boolean isWatched(Entiteit entity) { return list.containsKey(Hibernate.getClass(entity)); } boolean isWatched(Entiteit entity); boolean isWatched(Entiteit entiteit, String property); static boolean isSleutelWaarde(Entiteit entiteit, String expression); static boolean isSleutelWaarde(IdObject ent... | BronWatchList { public boolean isWatched(Entiteit entity) { return list.containsKey(Hibernate.getClass(entity)); } boolean isWatched(Entiteit entity); boolean isWatched(Entiteit entiteit, String property); static boolean isSleutelWaarde(Entiteit entiteit, String expression); static boolean isSleutelWaarde(IdObject ent... |
@Test public void puntSeparated() { assertEquals("A.", StringUtil.puntSeperated("a")); assertEquals("A.B.C.", StringUtil.puntSeperated("abc")); assertEquals("", StringUtil.puntSeperated("")); assertEquals("IJ.K.", StringUtil.puntSeperated("IJK")); assertEquals("K.IJ.", StringUtil.puntSeperated("kij")); assertEquals("K.... | public static String puntSeperated(String sentence) { List<String> adapted = new ArrayList<String>(); for (int i = 0; i < sentence.length(); i++) { char c = sentence.charAt(i); if (c != '.') { boolean done = false; for (String samengesteld : SAMENGESTELDE_LETTERS) { if (sentence.substring(i).toUpperCase().startsWith(sa... | StringUtil { public static String puntSeperated(String sentence) { List<String> adapted = new ArrayList<String>(); for (int i = 0; i < sentence.length(); i++) { char c = sentence.charAt(i); if (c != '.') { boolean done = false; for (String samengesteld : SAMENGESTELDE_LETTERS) { if (sentence.substring(i).toUpperCase().... | StringUtil { public static String puntSeperated(String sentence) { List<String> adapted = new ArrayList<String>(); for (int i = 0; i < sentence.length(); i++) { char c = sentence.charAt(i); if (c != '.') { boolean done = false; for (String samengesteld : SAMENGESTELDE_LETTERS) { if (sentence.substring(i).toUpperCase().... | StringUtil { public static String puntSeperated(String sentence) { List<String> adapted = new ArrayList<String>(); for (int i = 0; i < sentence.length(); i++) { char c = sentence.charAt(i); if (c != '.') { boolean done = false; for (String samengesteld : SAMENGESTELDE_LETTERS) { if (sentence.substring(i).toUpperCase().... | StringUtil { public static String puntSeperated(String sentence) { List<String> adapted = new ArrayList<String>(); for (int i = 0; i < sentence.length(); i++) { char c = sentence.charAt(i); if (c != '.') { boolean done = false; for (String samengesteld : SAMENGESTELDE_LETTERS) { if (sentence.substring(i).toUpperCase().... |
@Test public void countOccurances() { assertEquals(0, StringUtil.countOccurances(null, '.')); assertEquals(0, StringUtil.countOccurances("", '.')); assertEquals(0, StringUtil.countOccurances(" ", '.')); assertEquals(0, StringUtil.countOccurances("abcdefgh", '.')); assertEquals(1, StringUtil.countOccurances(".", '.')); ... | public static int countOccurances(String org, char character) { if (org == null) return 0; int count = 0; int index = 0; while (index >= 0) { index = org.indexOf(character, index); if (index >= 0) { count++; index++; } } return count; } | StringUtil { public static int countOccurances(String org, char character) { if (org == null) return 0; int count = 0; int index = 0; while (index >= 0) { index = org.indexOf(character, index); if (index >= 0) { count++; index++; } } return count; } } | StringUtil { public static int countOccurances(String org, char character) { if (org == null) return 0; int count = 0; int index = 0; while (index >= 0) { index = org.indexOf(character, index); if (index >= 0) { count++; index++; } } return count; } private StringUtil(); } | StringUtil { public static int countOccurances(String org, char character) { if (org == null) return 0; int count = 0; int index = 0; while (index >= 0) { index = org.indexOf(character, index); if (index >= 0) { count++; index++; } } return count; } private StringUtil(); static boolean checkMatchesRegExp(String parame... | StringUtil { public static int countOccurances(String org, char character) { if (org == null) return 0; int count = 0; int index = 0; while (index >= 0) { index = org.indexOf(character, index); if (index >= 0) { count++; index++; } } return count; } private StringUtil(); static boolean checkMatchesRegExp(String parame... |
@Test public void toStringTest() { assertNull("_", StringUtil.toString(null, "-", (String) null)); assertEquals("_", StringUtil.toString(null, "-", "_")); assertEquals("_", StringUtil.toString(JavaUtil.asList(), "-", "_")); assertEquals("1", StringUtil.toString(JavaUtil.asList(1), "-", "_")); assertEquals("1-2", String... | public static <T> String toString(Collection<T> list, String token, String defaultString) { return toString(list, defaultString, new DefaultStringConverter<T>(token)); } | StringUtil { public static <T> String toString(Collection<T> list, String token, String defaultString) { return toString(list, defaultString, new DefaultStringConverter<T>(token)); } } | StringUtil { public static <T> String toString(Collection<T> list, String token, String defaultString) { return toString(list, defaultString, new DefaultStringConverter<T>(token)); } private StringUtil(); } | StringUtil { public static <T> String toString(Collection<T> list, String token, String defaultString) { return toString(list, defaultString, new DefaultStringConverter<T>(token)); } private StringUtil(); static boolean checkMatchesRegExp(String parameter, String value, String regexp); @Deprecated() static String stri... | StringUtil { public static <T> String toString(Collection<T> list, String token, String defaultString) { return toString(list, defaultString, new DefaultStringConverter<T>(token)); } private StringUtil(); static boolean checkMatchesRegExp(String parameter, String value, String regexp); @Deprecated() static String stri... |
@Test public void convertCamelCase() { String[] camels = new String[] {"EduArteDeelnemerMutatieLogVerwerker", "EenEduArteDeelnemerMutatieLogVerwerker", "RedSpiderDeelnemerWijzigingenVerwerker", "TheQuickLittleBrownFox", "HTTP", "HTTPRequest", "STATIC_CONSTANT", null}; String[] converted = new String[] {"EduArte deelnem... | public static String convertCamelCase(String camelCase) { if (camelCase == null) return null; boolean containsEduArte = camelCase.contains("EduArte"); boolean containsRedSpider = camelCase.contains("RedSpider"); StringBuilder builder = new StringBuilder(camelCase.length() + 10); builder.append(camelCase.charAt(0)); cha... | StringUtil { public static String convertCamelCase(String camelCase) { if (camelCase == null) return null; boolean containsEduArte = camelCase.contains("EduArte"); boolean containsRedSpider = camelCase.contains("RedSpider"); StringBuilder builder = new StringBuilder(camelCase.length() + 10); builder.append(camelCase.ch... | StringUtil { public static String convertCamelCase(String camelCase) { if (camelCase == null) return null; boolean containsEduArte = camelCase.contains("EduArte"); boolean containsRedSpider = camelCase.contains("RedSpider"); StringBuilder builder = new StringBuilder(camelCase.length() + 10); builder.append(camelCase.ch... | StringUtil { public static String convertCamelCase(String camelCase) { if (camelCase == null) return null; boolean containsEduArte = camelCase.contains("EduArte"); boolean containsRedSpider = camelCase.contains("RedSpider"); StringBuilder builder = new StringBuilder(camelCase.length() + 10); builder.append(camelCase.ch... | StringUtil { public static String convertCamelCase(String camelCase) { if (camelCase == null) return null; boolean containsEduArte = camelCase.contains("EduArte"); boolean containsRedSpider = camelCase.contains("RedSpider"); StringBuilder builder = new StringBuilder(camelCase.length() + 10); builder.append(camelCase.ch... |
@Test public void checkMatchesRegExp() { assertTrue(StringUtil.checkMatchesRegExp("test", "abc", ".*")); assertTrue(StringUtil.checkMatchesRegExp("test", "abc", "\\w*")); assertTrue(StringUtil.checkMatchesRegExp("test", "abc", "\\w*")); assertFalse(StringUtil.checkMatchesRegExp("test", "a$bc", "\\w*")); assertTrue(Stri... | public static boolean checkMatchesRegExp(String parameter, String value, String regexp) { Asserts.assertNotNull(parameter, value); Asserts.assertNotNull("regexp", regexp); Pattern pattern = Pattern.compile(regexp); String trimmedValue = value.trim(); Matcher matcher = pattern.matcher(trimmedValue.subSequence(0, trimmed... | StringUtil { public static boolean checkMatchesRegExp(String parameter, String value, String regexp) { Asserts.assertNotNull(parameter, value); Asserts.assertNotNull("regexp", regexp); Pattern pattern = Pattern.compile(regexp); String trimmedValue = value.trim(); Matcher matcher = pattern.matcher(trimmedValue.subSequen... | StringUtil { public static boolean checkMatchesRegExp(String parameter, String value, String regexp) { Asserts.assertNotNull(parameter, value); Asserts.assertNotNull("regexp", regexp); Pattern pattern = Pattern.compile(regexp); String trimmedValue = value.trim(); Matcher matcher = pattern.matcher(trimmedValue.subSequen... | StringUtil { public static boolean checkMatchesRegExp(String parameter, String value, String regexp) { Asserts.assertNotNull(parameter, value); Asserts.assertNotNull("regexp", regexp); Pattern pattern = Pattern.compile(regexp); String trimmedValue = value.trim(); Matcher matcher = pattern.matcher(trimmedValue.subSequen... | StringUtil { public static boolean checkMatchesRegExp(String parameter, String value, String regexp) { Asserts.assertNotNull(parameter, value); Asserts.assertNotNull("regexp", regexp); Pattern pattern = Pattern.compile(regexp); String trimmedValue = value.trim(); Matcher matcher = pattern.matcher(trimmedValue.subSequen... |
@Test public void emptyOrStringValue() { assertEquals("", StringUtil.emptyOrStringValue(null)); assertEquals("1", StringUtil.emptyOrStringValue(1)); } | public static String emptyOrStringValue(Object value) { if (value == null) return ""; return String.valueOf(value); } | StringUtil { public static String emptyOrStringValue(Object value) { if (value == null) return ""; return String.valueOf(value); } } | StringUtil { public static String emptyOrStringValue(Object value) { if (value == null) return ""; return String.valueOf(value); } private StringUtil(); } | StringUtil { public static String emptyOrStringValue(Object value) { if (value == null) return ""; return String.valueOf(value); } private StringUtil(); static boolean checkMatchesRegExp(String parameter, String value, String regexp); @Deprecated() static String stripHighAscii(String tekst); static Integer getFirstNum... | StringUtil { public static String emptyOrStringValue(Object value) { if (value == null) return ""; return String.valueOf(value); } private StringUtil(); static boolean checkMatchesRegExp(String parameter, String value, String regexp); @Deprecated() static String stripHighAscii(String tekst); static Integer getFirstNum... |
@Test public void nullOrStringValue() { assertNull(StringUtil.nullOrStringValue(null)); assertEquals("1", StringUtil.nullOrStringValue(1)); } | public static String nullOrStringValue(Object value) { if (value == null) return null; return String.valueOf(value); } | StringUtil { public static String nullOrStringValue(Object value) { if (value == null) return null; return String.valueOf(value); } } | StringUtil { public static String nullOrStringValue(Object value) { if (value == null) return null; return String.valueOf(value); } private StringUtil(); } | StringUtil { public static String nullOrStringValue(Object value) { if (value == null) return null; return String.valueOf(value); } private StringUtil(); static boolean checkMatchesRegExp(String parameter, String value, String regexp); @Deprecated() static String stripHighAscii(String tekst); static Integer getFirstNu... | StringUtil { public static String nullOrStringValue(Object value) { if (value == null) return null; return String.valueOf(value); } private StringUtil(); static boolean checkMatchesRegExp(String parameter, String value, String regexp); @Deprecated() static String stripHighAscii(String tekst); static Integer getFirstNu... |
@Test public void checkIsIpAdres() { assertTrue(StringUtil.isIpAdres("1.1.1.1")); assertTrue(StringUtil.isIpAdres("192.168.1.1")); assertTrue(StringUtil.isIpAdres("255.255.255.255")); assertFalse(StringUtil.isIpAdres("192.168.1.x")); assertFalse(StringUtil.isIpAdres("192.168.1.")); assertFalse(StringUtil.isIpAdres("192... | public static boolean isIpAdres(String string) { Pattern pattern = Pattern.compile(IPADRES_PATTERN, Pattern.CASE_INSENSITIVE); return !isEmpty(string) && pattern.matcher(string).matches(); } | StringUtil { public static boolean isIpAdres(String string) { Pattern pattern = Pattern.compile(IPADRES_PATTERN, Pattern.CASE_INSENSITIVE); return !isEmpty(string) && pattern.matcher(string).matches(); } } | StringUtil { public static boolean isIpAdres(String string) { Pattern pattern = Pattern.compile(IPADRES_PATTERN, Pattern.CASE_INSENSITIVE); return !isEmpty(string) && pattern.matcher(string).matches(); } private StringUtil(); } | StringUtil { public static boolean isIpAdres(String string) { Pattern pattern = Pattern.compile(IPADRES_PATTERN, Pattern.CASE_INSENSITIVE); return !isEmpty(string) && pattern.matcher(string).matches(); } private StringUtil(); static boolean checkMatchesRegExp(String parameter, String value, String regexp); @Deprecated... | StringUtil { public static boolean isIpAdres(String string) { Pattern pattern = Pattern.compile(IPADRES_PATTERN, Pattern.CASE_INSENSITIVE); return !isEmpty(string) && pattern.matcher(string).matches(); } private StringUtil(); static boolean checkMatchesRegExp(String parameter, String value, String regexp); @Deprecated... |
@Test public void testAsDate() { Calendar calendar = Calendar.getInstance(); Date calibration = setAndTestDate(calendar, 4679, Calendar.JUNE, 4); TimeUtil util = new TimeUtil(); Date result = util.asDate(calibration); assertNotNull(result); calendar.setTime(result); testDate(calendar, 4679, Calendar.JUNE, 4); calibrati... | public Date asDate(Date date) { if (date == null) return null; return asDate(date.getTime()); } | TimeUtil { public Date asDate(Date date) { if (date == null) return null; return asDate(date.getTime()); } } | TimeUtil { public Date asDate(Date date) { if (date == null) return null; return asDate(date.getTime()); } TimeUtil(); TimeUtil(Calendar calendar); } | TimeUtil { public Date asDate(Date date) { if (date == null) return null; return asDate(date.getTime()); } TimeUtil(); TimeUtil(Calendar calendar); Date asDate(Date date); Date asDate(long date); Date asDate(int year, int month, int day); Date isoStringAsDate(String isoDateString); Date isoStringAsDateTime(String isoD... | TimeUtil { public Date asDate(Date date) { if (date == null) return null; return asDate(date.getTime()); } TimeUtil(); TimeUtil(Calendar calendar); Date asDate(Date date); Date asDate(long date); Date asDate(int year, int month, int day); Date isoStringAsDate(String isoDateString); Date isoStringAsDateTime(String isoD... |
@Test public void testAsTime() { Calendar calendar = Calendar.getInstance(); Date calibration = setAndTestTime(calendar, 16, 20, 55); TimeUtil util = new TimeUtil(); Date result = util.asTime(calibration); assertNotNull(result); calendar.setTime(result); testTime(calendar, 16, 20, 55); } | public Date asTime(Date date) { if (date == null) return null; return asTime(date.getTime()); } | TimeUtil { public Date asTime(Date date) { if (date == null) return null; return asTime(date.getTime()); } } | TimeUtil { public Date asTime(Date date) { if (date == null) return null; return asTime(date.getTime()); } TimeUtil(); TimeUtil(Calendar calendar); } | TimeUtil { public Date asTime(Date date) { if (date == null) return null; return asTime(date.getTime()); } TimeUtil(); TimeUtil(Calendar calendar); Date asDate(Date date); Date asDate(long date); Date asDate(int year, int month, int day); Date isoStringAsDate(String isoDateString); Date isoStringAsDateTime(String isoD... | TimeUtil { public Date asTime(Date date) { if (date == null) return null; return asTime(date.getTime()); } TimeUtil(); TimeUtil(Calendar calendar); Date asDate(Date date); Date asDate(long date); Date asDate(int year, int month, int day); Date isoStringAsDate(String isoDateString); Date isoStringAsDateTime(String isoD... |
@Test public void deelnemerMetVoorlopigeVerbintenisNietInScope() { Deelnemer deelnemer = maakDeelnemerMetVerbintenis(Voorlopig); assertFalse(model.isInBronScope(deelnemer)); } | public boolean isInBronScope(Adres adres) { if (adres == null) return false; List<PersoonAdres> persoonAdressen = adres.getPersoonAdressen(); if (persoonAdressen == null || persoonAdressen.isEmpty()) { return false; } for (PersoonAdres persoonAdres : persoonAdressen) { if (isInBronScope(persoonAdres.getPersoon())) retu... | BronEduArteModel { public boolean isInBronScope(Adres adres) { if (adres == null) return false; List<PersoonAdres> persoonAdressen = adres.getPersoonAdressen(); if (persoonAdressen == null || persoonAdressen.isEmpty()) { return false; } for (PersoonAdres persoonAdres : persoonAdressen) { if (isInBronScope(persoonAdres.... | BronEduArteModel { public boolean isInBronScope(Adres adres) { if (adres == null) return false; List<PersoonAdres> persoonAdressen = adres.getPersoonAdressen(); if (persoonAdressen == null || persoonAdressen.isEmpty()) { return false; } for (PersoonAdres persoonAdres : persoonAdressen) { if (isInBronScope(persoonAdres.... | BronEduArteModel { public boolean isInBronScope(Adres adres) { if (adres == null) return false; List<PersoonAdres> persoonAdressen = adres.getPersoonAdressen(); if (persoonAdressen == null || persoonAdressen.isEmpty()) { return false; } for (PersoonAdres persoonAdres : persoonAdressen) { if (isInBronScope(persoonAdres.... | BronEduArteModel { public boolean isInBronScope(Adres adres) { if (adres == null) return false; List<PersoonAdres> persoonAdressen = adres.getPersoonAdressen(); if (persoonAdressen == null || persoonAdressen.isEmpty()) { return false; } for (PersoonAdres persoonAdres : persoonAdressen) { if (isInBronScope(persoonAdres.... |
@Test public void testAsDateTime() { Calendar calendar = Calendar.getInstance(); Date calibration = setAndTestDate(calendar, 4679, Calendar.JUNE, 4); calibration = setAndTestTime(calendar, 16, 20, 55); TimeUtil util = new TimeUtil(); Date result = util.asDateTime(calibration); assertNotNull(result); calendar.setTime(re... | public Date asDateTime(Date date) { if (date == null) return null; return asDateTime(date.getTime()); } | TimeUtil { public Date asDateTime(Date date) { if (date == null) return null; return asDateTime(date.getTime()); } } | TimeUtil { public Date asDateTime(Date date) { if (date == null) return null; return asDateTime(date.getTime()); } TimeUtil(); TimeUtil(Calendar calendar); } | TimeUtil { public Date asDateTime(Date date) { if (date == null) return null; return asDateTime(date.getTime()); } TimeUtil(); TimeUtil(Calendar calendar); Date asDate(Date date); Date asDate(long date); Date asDate(int year, int month, int day); Date isoStringAsDate(String isoDateString); Date isoStringAsDateTime(Str... | TimeUtil { public Date asDateTime(Date date) { if (date == null) return null; return asDateTime(date.getTime()); } TimeUtil(); TimeUtil(Calendar calendar); Date asDate(Date date); Date asDate(long date); Date asDate(int year, int month, int day); Date isoStringAsDate(String isoDateString); Date isoStringAsDateTime(Str... |
@Test public void testGetWorkDays() { TimeUtil util = new TimeUtil(); Calendar calendar = Calendar.getInstance(); assertEquals(util.getWorkDays(setAndTestDate(calendar, 2006, Calendar.JULY, 25), 3), 3); assertEquals(util.getWorkDays(setAndTestDate(calendar, 2006, Calendar.JULY, 25), 5), 3); assertEquals(util.getWorkDay... | public int getWorkDays(Date date, int days) { int workDays = days; if (workDays < 0) Math.abs(workDays); workDays = workDays - getWeekendDays(date, days); return workDays; } | TimeUtil { public int getWorkDays(Date date, int days) { int workDays = days; if (workDays < 0) Math.abs(workDays); workDays = workDays - getWeekendDays(date, days); return workDays; } } | TimeUtil { public int getWorkDays(Date date, int days) { int workDays = days; if (workDays < 0) Math.abs(workDays); workDays = workDays - getWeekendDays(date, days); return workDays; } TimeUtil(); TimeUtil(Calendar calendar); } | TimeUtil { public int getWorkDays(Date date, int days) { int workDays = days; if (workDays < 0) Math.abs(workDays); workDays = workDays - getWeekendDays(date, days); return workDays; } TimeUtil(); TimeUtil(Calendar calendar); Date asDate(Date date); Date asDate(long date); Date asDate(int year, int month, int day); Da... | TimeUtil { public int getWorkDays(Date date, int days) { int workDays = days; if (workDays < 0) Math.abs(workDays); workDays = workDays - getWeekendDays(date, days); return workDays; } TimeUtil(); TimeUtil(Calendar calendar); Date asDate(Date date); Date asDate(long date); Date asDate(int year, int month, int day); Da... |
@Test public void testGetWeekendDays() { TimeUtil util = new TimeUtil(); Calendar calendar = Calendar.getInstance(); assertEquals(util.getWeekendDays(setAndTestDate(calendar, 2006, Calendar.JULY, 25), 1), 0); assertEquals(util.getWeekendDays(setAndTestDate(calendar, 2006, Calendar.JANUARY, 1), 365), 104); assertEquals(... | public int getWeekendDays(Date date, int days) { Date tempDate = date; int tempDays = days; boolean future = days >= 0; if (!future) { tempDate = addDays(tempDate, tempDays - 1); tempDays = Math.abs(tempDays); } int fixedSunday = Calendar.SUNDAY; int dateDay = getDayOfWeek(tempDate); if (Calendar.SUNDAY < Calendar.SATU... | TimeUtil { public int getWeekendDays(Date date, int days) { Date tempDate = date; int tempDays = days; boolean future = days >= 0; if (!future) { tempDate = addDays(tempDate, tempDays - 1); tempDays = Math.abs(tempDays); } int fixedSunday = Calendar.SUNDAY; int dateDay = getDayOfWeek(tempDate); if (Calendar.SUNDAY < Ca... | TimeUtil { public int getWeekendDays(Date date, int days) { Date tempDate = date; int tempDays = days; boolean future = days >= 0; if (!future) { tempDate = addDays(tempDate, tempDays - 1); tempDays = Math.abs(tempDays); } int fixedSunday = Calendar.SUNDAY; int dateDay = getDayOfWeek(tempDate); if (Calendar.SUNDAY < Ca... | TimeUtil { public int getWeekendDays(Date date, int days) { Date tempDate = date; int tempDays = days; boolean future = days >= 0; if (!future) { tempDate = addDays(tempDate, tempDays - 1); tempDays = Math.abs(tempDays); } int fixedSunday = Calendar.SUNDAY; int dateDay = getDayOfWeek(tempDate); if (Calendar.SUNDAY < Ca... | TimeUtil { public int getWeekendDays(Date date, int days) { Date tempDate = date; int tempDays = days; boolean future = days >= 0; if (!future) { tempDate = addDays(tempDate, tempDays - 1); tempDays = Math.abs(tempDays); } int fixedSunday = Calendar.SUNDAY; int dateDay = getDayOfWeek(tempDate); if (Calendar.SUNDAY < Ca... |
@Test(expected = RuntimeException.class) public void flushWithException() { ResourceUtil.flush(new Flushable() { @Override public void flush() throws IOException { throw new IOException("Een verwachte exceptie"); } }); } | public static void flush(Object objectToFlush) { if (objectToFlush instanceof Flushable) { Flushable flushable = (Flushable) objectToFlush; try { flushable.flush(); } catch (IOException e) { log.error(e.toString(), e); throw new RuntimeException(e); } } } | ResourceUtil { public static void flush(Object objectToFlush) { if (objectToFlush instanceof Flushable) { Flushable flushable = (Flushable) objectToFlush; try { flushable.flush(); } catch (IOException e) { log.error(e.toString(), e); throw new RuntimeException(e); } } } } | ResourceUtil { public static void flush(Object objectToFlush) { if (objectToFlush instanceof Flushable) { Flushable flushable = (Flushable) objectToFlush; try { flushable.flush(); } catch (IOException e) { log.error(e.toString(), e); throw new RuntimeException(e); } } } private ResourceUtil(); } | ResourceUtil { public static void flush(Object objectToFlush) { if (objectToFlush instanceof Flushable) { Flushable flushable = (Flushable) objectToFlush; try { flushable.flush(); } catch (IOException e) { log.error(e.toString(), e); throw new RuntimeException(e); } } } private ResourceUtil(); static void closeQuietly... | ResourceUtil { public static void flush(Object objectToFlush) { if (objectToFlush instanceof Flushable) { Flushable flushable = (Flushable) objectToFlush; try { flushable.flush(); } catch (IOException e) { log.error(e.toString(), e); throw new RuntimeException(e); } } } private ResourceUtil(); static void closeQuietly... |
@Test public void flushWithNull() { ResourceUtil.flush(null); } | public static void flush(Object objectToFlush) { if (objectToFlush instanceof Flushable) { Flushable flushable = (Flushable) objectToFlush; try { flushable.flush(); } catch (IOException e) { log.error(e.toString(), e); throw new RuntimeException(e); } } } | ResourceUtil { public static void flush(Object objectToFlush) { if (objectToFlush instanceof Flushable) { Flushable flushable = (Flushable) objectToFlush; try { flushable.flush(); } catch (IOException e) { log.error(e.toString(), e); throw new RuntimeException(e); } } } } | ResourceUtil { public static void flush(Object objectToFlush) { if (objectToFlush instanceof Flushable) { Flushable flushable = (Flushable) objectToFlush; try { flushable.flush(); } catch (IOException e) { log.error(e.toString(), e); throw new RuntimeException(e); } } } private ResourceUtil(); } | ResourceUtil { public static void flush(Object objectToFlush) { if (objectToFlush instanceof Flushable) { Flushable flushable = (Flushable) objectToFlush; try { flushable.flush(); } catch (IOException e) { log.error(e.toString(), e); throw new RuntimeException(e); } } } private ResourceUtil(); static void closeQuietly... | ResourceUtil { public static void flush(Object objectToFlush) { if (objectToFlush instanceof Flushable) { Flushable flushable = (Flushable) objectToFlush; try { flushable.flush(); } catch (IOException e) { log.error(e.toString(), e); throw new RuntimeException(e); } } } private ResourceUtil(); static void closeQuietly... |
@Test public void flush() { ResourceUtil.flush(new Flushable() { @Override public void flush() { flushed = true; } }); Assert.assertTrue(flushed); } | public static void flush(Object objectToFlush) { if (objectToFlush instanceof Flushable) { Flushable flushable = (Flushable) objectToFlush; try { flushable.flush(); } catch (IOException e) { log.error(e.toString(), e); throw new RuntimeException(e); } } } | ResourceUtil { public static void flush(Object objectToFlush) { if (objectToFlush instanceof Flushable) { Flushable flushable = (Flushable) objectToFlush; try { flushable.flush(); } catch (IOException e) { log.error(e.toString(), e); throw new RuntimeException(e); } } } } | ResourceUtil { public static void flush(Object objectToFlush) { if (objectToFlush instanceof Flushable) { Flushable flushable = (Flushable) objectToFlush; try { flushable.flush(); } catch (IOException e) { log.error(e.toString(), e); throw new RuntimeException(e); } } } private ResourceUtil(); } | ResourceUtil { public static void flush(Object objectToFlush) { if (objectToFlush instanceof Flushable) { Flushable flushable = (Flushable) objectToFlush; try { flushable.flush(); } catch (IOException e) { log.error(e.toString(), e); throw new RuntimeException(e); } } } private ResourceUtil(); static void closeQuietly... | ResourceUtil { public static void flush(Object objectToFlush) { if (objectToFlush instanceof Flushable) { Flushable flushable = (Flushable) objectToFlush; try { flushable.flush(); } catch (IOException e) { log.error(e.toString(), e); throw new RuntimeException(e); } } } private ResourceUtil(); static void closeQuietly... |
@Test public void testWriteByteOrderMark() throws IOException { String filename = "target/Utf8BufferedWriterTest_bom.txt"; String text = "UTF-8 Test met byte order mark"; writeString(createWriter(filename), true, text); FileInputStream in = new FileInputStream(filename); byte[] actual = new byte[3]; in.read(actual, 0, ... | public void writeByteOrderMark() throws IOException { write(new String(BOM, "UTF-8")); } | Utf8BufferedWriter extends BufferedWriter { public void writeByteOrderMark() throws IOException { write(new String(BOM, "UTF-8")); } } | Utf8BufferedWriter extends BufferedWriter { public void writeByteOrderMark() throws IOException { write(new String(BOM, "UTF-8")); } Utf8BufferedWriter(File file); Utf8BufferedWriter(File file, int size); } | Utf8BufferedWriter extends BufferedWriter { public void writeByteOrderMark() throws IOException { write(new String(BOM, "UTF-8")); } Utf8BufferedWriter(File file); Utf8BufferedWriter(File file, int size); void writeByteOrderMark(); } | Utf8BufferedWriter extends BufferedWriter { public void writeByteOrderMark() throws IOException { write(new String(BOM, "UTF-8")); } Utf8BufferedWriter(File file); Utf8BufferedWriter(File file, int size); void writeByteOrderMark(); static byte[] BOM; } |
@Test public void singleFindDirtyReturnsNull() { Interceptor interceptor = mock(Interceptor.class); when(interceptor.findDirty(null, null, null, null, null, null)).thenReturn(null); CompoundHibernateInterceptor compound = new CompoundHibernateInterceptor(interceptor); int[] dirty = compound.findDirty(null, null, null, ... | @Override public int[] findDirty(Object entity, Serializable id, Object[] currentState, Object[] previousState, String[] propertyNames, Type[] types) { Set<Integer> result = new HashSet<Integer>(); boolean shouldReturnNull = true; for (Interceptor interceptor : interceptors) { int[] dirtyBits = interceptor .findDirty(e... | CompoundHibernateInterceptor extends EmptyInterceptor implements Iterable<Interceptor> { @Override public int[] findDirty(Object entity, Serializable id, Object[] currentState, Object[] previousState, String[] propertyNames, Type[] types) { Set<Integer> result = new HashSet<Integer>(); boolean shouldReturnNull = true; ... | CompoundHibernateInterceptor extends EmptyInterceptor implements Iterable<Interceptor> { @Override public int[] findDirty(Object entity, Serializable id, Object[] currentState, Object[] previousState, String[] propertyNames, Type[] types) { Set<Integer> result = new HashSet<Integer>(); boolean shouldReturnNull = true; ... | CompoundHibernateInterceptor extends EmptyInterceptor implements Iterable<Interceptor> { @Override public int[] findDirty(Object entity, Serializable id, Object[] currentState, Object[] previousState, String[] propertyNames, Type[] types) { Set<Integer> result = new HashSet<Integer>(); boolean shouldReturnNull = true; ... | CompoundHibernateInterceptor extends EmptyInterceptor implements Iterable<Interceptor> { @Override public int[] findDirty(Object entity, Serializable id, Object[] currentState, Object[] previousState, String[] propertyNames, Type[] types) { Set<Integer> result = new HashSet<Integer>(); boolean shouldReturnNull = true; ... |
@Test public void singleFindDirtyReturnsEmpty() { Interceptor interceptor = mock(Interceptor.class); when(interceptor.findDirty(null, null, null, null, null, null)).thenReturn(new int[] {}); Interceptor compound = new CompoundHibernateInterceptor(interceptor); int[] dirty = compound.findDirty(null, null, null, null, nu... | @Override public int[] findDirty(Object entity, Serializable id, Object[] currentState, Object[] previousState, String[] propertyNames, Type[] types) { Set<Integer> result = new HashSet<Integer>(); boolean shouldReturnNull = true; for (Interceptor interceptor : interceptors) { int[] dirtyBits = interceptor .findDirty(e... | CompoundHibernateInterceptor extends EmptyInterceptor implements Iterable<Interceptor> { @Override public int[] findDirty(Object entity, Serializable id, Object[] currentState, Object[] previousState, String[] propertyNames, Type[] types) { Set<Integer> result = new HashSet<Integer>(); boolean shouldReturnNull = true; ... | CompoundHibernateInterceptor extends EmptyInterceptor implements Iterable<Interceptor> { @Override public int[] findDirty(Object entity, Serializable id, Object[] currentState, Object[] previousState, String[] propertyNames, Type[] types) { Set<Integer> result = new HashSet<Integer>(); boolean shouldReturnNull = true; ... | CompoundHibernateInterceptor extends EmptyInterceptor implements Iterable<Interceptor> { @Override public int[] findDirty(Object entity, Serializable id, Object[] currentState, Object[] previousState, String[] propertyNames, Type[] types) { Set<Integer> result = new HashSet<Integer>(); boolean shouldReturnNull = true; ... | CompoundHibernateInterceptor extends EmptyInterceptor implements Iterable<Interceptor> { @Override public int[] findDirty(Object entity, Serializable id, Object[] currentState, Object[] previousState, String[] propertyNames, Type[] types) { Set<Integer> result = new HashSet<Integer>(); boolean shouldReturnNull = true; ... |
@Test public void singleFindDirtyReturnsDirtyValues() { Interceptor interceptor = mock(Interceptor.class); when(interceptor.findDirty(null, null, null, null, null, null)) .thenReturn(new int[] {3, 4}); Interceptor compound = new CompoundHibernateInterceptor(interceptor); int[] dirty = compound.findDirty(null, null, nul... | @Override public int[] findDirty(Object entity, Serializable id, Object[] currentState, Object[] previousState, String[] propertyNames, Type[] types) { Set<Integer> result = new HashSet<Integer>(); boolean shouldReturnNull = true; for (Interceptor interceptor : interceptors) { int[] dirtyBits = interceptor .findDirty(e... | CompoundHibernateInterceptor extends EmptyInterceptor implements Iterable<Interceptor> { @Override public int[] findDirty(Object entity, Serializable id, Object[] currentState, Object[] previousState, String[] propertyNames, Type[] types) { Set<Integer> result = new HashSet<Integer>(); boolean shouldReturnNull = true; ... | CompoundHibernateInterceptor extends EmptyInterceptor implements Iterable<Interceptor> { @Override public int[] findDirty(Object entity, Serializable id, Object[] currentState, Object[] previousState, String[] propertyNames, Type[] types) { Set<Integer> result = new HashSet<Integer>(); boolean shouldReturnNull = true; ... | CompoundHibernateInterceptor extends EmptyInterceptor implements Iterable<Interceptor> { @Override public int[] findDirty(Object entity, Serializable id, Object[] currentState, Object[] previousState, String[] propertyNames, Type[] types) { Set<Integer> result = new HashSet<Integer>(); boolean shouldReturnNull = true; ... | CompoundHibernateInterceptor extends EmptyInterceptor implements Iterable<Interceptor> { @Override public int[] findDirty(Object entity, Serializable id, Object[] currentState, Object[] previousState, String[] propertyNames, Type[] types) { Set<Integer> result = new HashSet<Integer>(); boolean shouldReturnNull = true; ... |
@Test public void deelnemerMetVolledigeVerbintenisInScope() { Deelnemer deelnemer = maakDeelnemerMetVerbintenis(Volledig); assertTrue(model.isInBronScope(deelnemer)); } | public boolean isInBronScope(Adres adres) { if (adres == null) return false; List<PersoonAdres> persoonAdressen = adres.getPersoonAdressen(); if (persoonAdressen == null || persoonAdressen.isEmpty()) { return false; } for (PersoonAdres persoonAdres : persoonAdressen) { if (isInBronScope(persoonAdres.getPersoon())) retu... | BronEduArteModel { public boolean isInBronScope(Adres adres) { if (adres == null) return false; List<PersoonAdres> persoonAdressen = adres.getPersoonAdressen(); if (persoonAdressen == null || persoonAdressen.isEmpty()) { return false; } for (PersoonAdres persoonAdres : persoonAdressen) { if (isInBronScope(persoonAdres.... | BronEduArteModel { public boolean isInBronScope(Adres adres) { if (adres == null) return false; List<PersoonAdres> persoonAdressen = adres.getPersoonAdressen(); if (persoonAdressen == null || persoonAdressen.isEmpty()) { return false; } for (PersoonAdres persoonAdres : persoonAdressen) { if (isInBronScope(persoonAdres.... | BronEduArteModel { public boolean isInBronScope(Adres adres) { if (adres == null) return false; List<PersoonAdres> persoonAdressen = adres.getPersoonAdressen(); if (persoonAdressen == null || persoonAdressen.isEmpty()) { return false; } for (PersoonAdres persoonAdres : persoonAdressen) { if (isInBronScope(persoonAdres.... | BronEduArteModel { public boolean isInBronScope(Adres adres) { if (adres == null) return false; List<PersoonAdres> persoonAdressen = adres.getPersoonAdressen(); if (persoonAdressen == null || persoonAdressen.isEmpty()) { return false; } for (PersoonAdres persoonAdres : persoonAdressen) { if (isInBronScope(persoonAdres.... |
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