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def list_statistics_keys(): """ListStatistics definition""" return ["list", "counts"]
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def forecast_handler(req, req_body, res, res_body, zip): """Handles forecast requests""" return True
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from typing import Dict from typing import Callable from typing import Any def override_kwargs( kwargs: Dict[str, str], func: Callable[..., Any], filter: Callable[..., Any] = lambda _: True, ) -> Dict[str, str]: """Override the kwargs of a function given a function to apply and an optional filter. ...
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def get_qe_specific_fp_run_inputs( configure, code_pw, code_wannier90, code_pw2wannier90, get_repeated_pw_input, get_metadata_singlecore ): """ Creates the InSb inputs for the QE fp_run workflow. For the higher-level workflows (fp_tb, optimize_*), these are passed in the 'fp_run' namespace. ...
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import json def config_string(cfg_dict): """ Pretty-print cfg_dict with one-line queries """ upper_level = ["queries", "show_attributes", "priority", "gtf", "bed", "prefix", "outdir", "threads", "output_by_query"] query_level = ["feature", "feature_anchor", "distance", "strand", "relative_location", "filter_attr...
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from click.testing import CliRunner def cli_runner(script_info): """Create a CLI runner for testing a CLI command. Scope: module .. code-block:: python def test_cmd(cli_runner): result = cli_runner(mycmd) assert result.exit_code == 0 """ def cli_invoke(command, ...
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def get_titlebar_text(): """Return (style, text) tuples for startup.""" return [ ("class:title", "Hello World!"), ("class:title", " (Press <Exit> to quit.)"), ]
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import json def image_fnames_captions(captions_file, images_dir, partition): """ Loads annotations file and return lists with each image's path and caption Arguments: partition: string either 'train' or 'val' Returns: all_captions: list of strings list with ea...
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from typing import Any def is_empty(value: Any) -> bool: """ empty means given value is one of none, zero length string, empty list, empty dict """ if value is None: return True elif isinstance(value, str): return len(value) == 0 elif isinstance(value, list): return len(value) == 0 elif isinstance(value,...
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def check(lst: list, search_element: int) -> bool: """Check if the list contains the search_element.""" return any([True for i in lst if i == search_element])
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from pathlib import Path def data_dir(test_dir: Path) -> Path: """ Create a directory for storing the mock data set. """ _data_dir = test_dir / 'data' _data_dir.mkdir(exist_ok=True) return _data_dir
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import multiprocessing def get_runtime_brief(): """ A digest version of get_runtime to be used more frequently """ return {"cpu_count": multiprocessing.cpu_count()}
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def build_graph(defined_routes): """ build the graph form route definitions """ G = {} for row in defined_routes: t_fk_oid = int(row["t_fk_oid"]) t_pk_oid = int(row["t_pk_oid"]) if not t_fk_oid in G: G[t_fk_oid] = {} if not t_pk_oid in G: G[t_p...
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def populate_user_flags(conf, args): """Populate a dictionary of configuration flag parameters, "conf", from values supplied on the command line in the structure, "args".""" if args.cflags: conf['cflags'] = args.cflags.split(sep=' ') if args.ldflags: conf['ldflags'] = args.ldflags.sp...
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import re def get_list_from_comma_separated_string(comma_separated_list): """ get a python list of resource names from comma separated list :param str comma_separated_list: :return: """ # remove all extra whitespace after commas and before/after string but NOT in between resource names rem...
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def fx_ugoira_frames(): """frames data.""" return { '000000.jpg': 1000, '000001.jpg': 2000, '000002.jpg': 3000, }
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import re def _abbreviations_to_word(text: str): """ 对句子中的压缩次进行扩展成单词 :param text: 单个句子文本 :return: 转换后的句子文本 """ abbreviations = [ (re.compile('\\b%s\\.' % x[0], re.IGNORECASE), x[1]) for x in [ ('mrs', 'misess'), ('mr', 'mister'), ('dr', 'doctor'), ...
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def isstruct(ob): """ isstruct(ob) Returns whether the given object is an SSDF struct. """ if hasattr(ob, '__is_ssdf_struct__'): return bool(ob.__is_ssdf_struct__) else: return False
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def where_between(field_name, start_date, end_date): """ Return the bit of query for the dates interval. """ str = """ {0} between date_format('{1}', '%%Y-%%c-%%d %%H:%%i:%%S') and date_format('{2}', '%%Y-%%c-%%d 23:%%i:%%S') """ .format( field_name, ...
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def to_console_formatted_string(data: dict) -> str: """...""" def make_line(key: str) -> str: if key.startswith('__cauldron_'): return '' data_class = getattr(data[key], '__class__', data[key]) data_type = getattr(data_class, '__name__', type(data[key])) value = '{...
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def get_recommendation(anime_name, cosine_sim, clean_anime, anime_index): """ Getting pairwise similarity scores for all anime in the data frame. The function returns the top 10 most similar anime to the given query. """ idx = anime_index[anime_name] sim_scores = list(enumerate(cosine_sim[idx]))...
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import re def sort_with_num(path): """Extract leading numbers in a file name for numerical sorting.""" fname = path.name nums = re.match('^\d+', fname) if nums: return int(nums[0]) else: return 0
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import csv import re def indices(input_file): """ Parse the index file or target file and return a list of values. :return: """ index_list = [] line_num = 0 index_file = list(csv.reader(open(input_file), delimiter='\t')) for line in index_file: line_num += 1 col_count ...
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import argparse def parse_arguments(): """ Parse the arguments from the user """ parser = argparse.ArgumentParser( description="omeClust visualization script.\n", formatter_class=argparse.RawTextHelpFormatter) parser.add_argument( "adist", help="the input file D*...
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def most_common(l): """ Helper function. :l: List of strings. :returns: most common string. """ # another way to get max of list? #from collections import Counter #data = Counter(your_list_in_here) #data.most_common() # Returns all unique items and their counts #data.most_...
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import base64 def urlsafe_b64decode_nopadding(val): """Deal with unpadded urlsafe base64.""" # Yes, it accepts extra = characters. return base64.urlsafe_b64decode(str(val) + '===')
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def _subimg_bbox(img, subimage, xc, yc): """ Find the x/y bounding-box pixel coordinates in ``img`` needed to add ``subimage``, centered at ``(xc, yc)``, to ``img``. Returns ``None`` if the ``subimage`` would extend past the ``img`` boundary. """ ys, xs = subimage.shape y, x = img.shap...
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import math def fcmp(x, y, precision): """fcmp(x, y, precision) -> -1, 0, or 1""" if math.fabs(x-y) < precision: return 0 elif x < y: return -1 return 1
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def fuzzy_lookup_item(name_or_id, lst): """Lookup an item by either name or id. Looking up by id is exact match. Looking up by name is by containment, and if the term is entirely lowercase then it's also case-insensitive. Multiple matches will throw an exception, unless one of them was an exact mat...
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def _flatten_value_to_list(batch_values): """Converts an N-D dense or sparse batch to a 1-D list.""" # Ravel for flattening and tolist so that we go to native Python types # for more efficient followup processing. # batch_value, = batch_values return batch_value.ravel().tolist()
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import torch def y_gate(): """ Pauli y """ return torch.tensor([[0, -1j], [1j, 0]]) + 0j
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import tarfile def extract_tarball(tarball, install_dir): """Extract tarball to a local path""" if not tarball.path.is_file(): raise IOError(f"<info>{tarball.path}</info> is not a file!") try: with tarfile.open(tarball.path, "r:gz") as f_tarball: extraction_dir = [ ...
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def dict_merge(set1, set2): """Joins two dictionaries.""" return dict(list(set1.items()) + list(set2.items()))
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def _VarintSize(value): """Compute the size of a varint value.""" if value <= 0x7f: return 1 if value <= 0x3fff: return 2 if value <= 0x1fffff: return 3 if value <= 0xfffffff: return 4 if value <= 0x7ffffffff: return 5 if value <= 0x3ffffffffff: return 6 if value <= 0x1ffffffffffff: return 7 if value ...
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def is_android(builder_cfg): """Determine whether the given builder is an Android builder.""" return ('Android' in builder_cfg.get('extra_config', '') or builder_cfg.get('os') == 'Android')
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def twoSum(self, numbers, target): # ! 这个方法可行 """ :type numbers: List[int] :type target: int :rtype: List[int] """ numbers_dict = {} for idn, v in enumerate(numbers): if target - v in numbers_dict: return [numbers_dict[target - v] + 1, idn + 1] numbers_dict[v] = ...
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def celcius_to_farenheit(x): """calculate celcius to farenheit""" farenheit = (9*x/5) + 32 return farenheit
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def sentinel_id(vocabulary, return_value=None): """Token ID to use as a sentinel. By default, we use the last token in the vocabulary. Args: vocabulary: a t5.data.vocabularies.Vocabulary return_value: an optional integer Returns: an integer """ if return_value is not None: return return_va...
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from typing import Type def is_dict_specifier(value): # type: (object) -> bool """ Check if value is a supported dictionary. Check if a parameter of the task decorator is a dictionary that specifies at least Type (and therefore can include things like Prefix, see binary decorator test for some exa...
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def parse_star_count(stars_str): """Parse strings like 40.3k and get the no. of stars as a number""" stars_str = stars_str.strip() return int(float(stars_str[:-1]) * 1000) if stars_str[-1] == 'k' else int(stars_str)
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import shutil def is_libreoffice_sdk_available() -> bool: """ do we have idlc somewhere (we suppose it is made available in current path var.) ? """ return shutil.which("idlc") is not None
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def do_open(user_input): """identical to io.open in PY3""" try: with open(user_input) as f: return f.read() except Exception: return None
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import os def getDroppableFilename(mime_data): """ Returns the filename of a file dropped into the canvas (if it was accepted via @see isDroppableMimeType). """ if mime_data.hasUrls(): # Return the first locally existing file for url in mime_data.urls(): fpath = url.toL...
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def with_color(text, color, bold=False): """ Return a ZSH color-formatted string. Arguments --------- text: str text to be colored color: str ZSH color code bold: bool whether or not to make the text bold Returns ------- str string with ZSH color...
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def transition_soil_carbon(area_final, carbon_final, depth_final, transition_rate, year, area_initial, carbon_initial, depth_initial): """This is the formula for calculating the transition of soil carbon .. math:: (af * cf * df) - \ \\frac{1}{(1 ...
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import sys def dijkstra(graph, source): """Find the shortest path from the source node to every other node in the given graph""" # Declare and initialize result, unvisited, and path result = {i: sys.maxsize if i != source else 0 for i in graph.nodes} # placeholder, by default set distance to maxsize ...
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import numpy as np def remove_outliers(column): """ :param column: list of numbers :return: """ if len(column) < 1: return [] clean_column = [] q1 = np.percentile(column, 25) q3 = np.percentile(column, 75) #k = 1.5 k = 2 # [Q1 - k(Q3 - Q1), Q3 + k(Q3 - Q1)] lowe...
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import os import platform def get_os(): """ if called in powershell returns "powershell" if called in cygwin returns "cygwin" if called in darwin/osx returns "osx" for linux returns "linux" """ env = os.environ p = platform.system().lower() terminal = p operating_system = ...
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def split_data_set(data_set, axis, value): """ 按照给定特征划分数据集,筛选某个特征为指定特征值的数据 (然后因为是按该特征进行划分了,该特征在以后的划分中就不用再出现,所以把该特征在新的列表中移除) :param data_set: 待划分的数据集,格式如下,每一行是一个list,list最后一个元素就是标签,其他元素是特征 :param axis: 划分数据集的特征(特征的序号) :param value: 需要返回的特征的值(筛选特征的值要等于此值) :return: >>>myDat ...
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import shutil def rmdir_empty(f): """Returns a count of the number of directories it has deleted""" if not f.is_dir(): return 0 removable = True result = 0 for i in f.iterdir(): if i.is_dir(): result += rmdir_empty(i) removable = removable and not i.exists()...
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def check_source(module): """ Check that module doesn't have any globals. Example:: def test_no_global(self): result, line = check_source(self.module) self.assertTrue(result, "Make sure no code is outside functions.\\nRow: " + line) """ try: source = module.__...
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def return_request(data): """ Arguments: data Return if call detect: list[dist1, dist2, ...]: dist = { "feature": feature } Return if call extract: list[dist1, dist2, ...]: dist = { "confidence_score": predict p...
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def make_batch_keys(args, extras=None): """depending on the args, different data are used by the listener.""" batch_keys = ['objects', 'tokens', 'target_pos'] # all models use these if extras is not None: batch_keys += extras if args.obj_cls_alpha > 0: batch_keys.append('class_labels')...
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from typing import Any def first_fail_second_succeed(_: Any, context: Any) -> str: """ Simulate Etherscan saying for the first time 'wait', but for the second time 'success'. """ context.status_code = 200 try: if first_fail_second_succeed.called: # type: ignore return '{ "status": "1"...
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from typing import Any def escape_parameter(value: Any) -> str: """ Escape a query parameter. """ if value == "*": return value if isinstance(value, str): value = value.replace("'", "''") return f"'{value}'" if isinstance(value, bytes): value = value.decode("utf...
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def Get_Query(Fq): """ Get_Query """ Q = "" EoF = False Ok = False while True: l = Fq.readline() if ("--" in l) : # skip line continue elif l=="": EoF=True break else: Q += l if ";" in ...
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from pathlib import Path def file(base_path, other_path): """ Returns a single file """ return [[Path(base_path), Path(other_path)]]
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def make_str_lst_unc_val(id, luv): """ make_str_lst_unc_val(id, luv) Make a formatted string from an ID string and a list of uncertain values. Input ----- id A number or a string that will be output as a string. luv A list of DTSA-II UncertainValue2 items. These will be printed a...
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import typing def translate_null_strings_to_blanks(d: typing.Dict) -> typing.Dict: """Map over a dict and translate any null string values into ' '. Leave everything else as is. This is needed because you cannot add TableCell objects with only a null string or the client crashes. :param Dict d: dict ...
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import time def timer(func): """ Decorator to measure execution time """ def wrapper(*args, **kwargs): start_time = time.time() ret = func(*args, **kwargs) elapsed = time.time() - start_time print('{:s}: {:4f} sec'.format(func.__name__, elapsed)) return ret retu...
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import uuid def _create_keyword_plan_campaign(client, customer_id, keyword_plan): """Adds a keyword plan campaign to the given keyword plan. Args: client: An initialized instance of GoogleAdsClient customer_id: A str of the customer_id to use in requests. keyword_plan: A str of the ke...
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def is_hermitian(mx, tol=1e-9): """ Test whether mx is a hermitian matrix. Parameters ---------- mx : numpy array Matrix to test. tol : float, optional Tolerance on absolute magitude of elements. Returns ------- bool True if mx is hermitian, otherwise False...
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from typing import Any def get_object_unique_name(obj: Any) -> str: """Return a unique string associated with the given object. That string is constructed as follows: <object class name>_<object_hex_id> """ return f"{type(obj).__name__}_{hex(id(obj))}"
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def filter_dict(regex_dict, request_keys): """ filter regular expression dictionary by request_keys :param regex_dict: a dictionary of regular expressions that follows the following format: { "name": "sigma_aldrich", "regexes": ...
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import six def calculate_partition_movement(prev_assignment, curr_assignment): """Calculate the partition movements from initial to current assignment. Algorithm: For each partition in initial assignment # If replica set different in current assignment: # Get Difference in ...
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def recurse_while(predicate, f, *args): """ Accumulate value by executing recursively function `f`. The function `f` is executed with starting arguments. While the predicate for the result is true, the result is fed into function `f`. If predicate is never true then starting arguments are returned...
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def total_allocation_constraint(weight, allocation: float, upper_bound: bool = True): """ Used for inequality constraint for the total allocation. :param weight: np.array :param allocation: float :param upper_bound: bool if true the constraint is from above (sum of weights <= allocation) else from b...
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import re def split_prec_rows(df): """Split precincts into two rows. NOTE: Because this creates a copy of the row values, don't rely on total vote counts, just look at percentage. """ for idx in df.index: # look for rows with precincts that need to be split if re.search('\d{4}/\d{4}'...
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def mu_model(u, X, U, k): """ Returns the utility of the kth player Parameters ---------- u X U k Returns ------- """ M = X.T @ X rewards = M @ u penalties = u.T @ M @ U[:, :k] * U[:, :k] return rewards - penalties.sum(axis=1)
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def rightOfDeciSeperatorToDeci(a): """This function only convert value at the right side of decimal seperator to decimal""" deciNum = 0 for i in range(len(a)): deciNum += (int(a[i]))*2**-(i+1) return deciNum
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import torch def conv(input, weight): """ Returns the convolution of input and weight tensors, where input contains sequential data. The convolution is along the sequence axis. input is of size [batchSize, inputDim, seqLength] """ output = torch.nn.functional.conv1d(input...
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from typing import List from typing import Optional def label_to_span(labels: List[str], scheme: Optional[str] = 'BIO') -> dict: """ convert labels to spans :param labels: a list of labels :param scheme: labeling scheme, in ['BIO', 'BILOU']. :return: labeled spans, a list of tupl...
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def _normalize_handler_method(method): """Transforms an HTTP method into a valid Python identifier.""" return method.lower().replace("-", "_")
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def compare_files(og_maxima,new_maxima, compare_file, until=100, divisor=1000): """ given input of the maxima of a graph, compare it to the maxima from data100.txt maxima will be a series of x,y coordinates corresponding to the x,y values of a maximum from a file. First see if there is a maxima with t...
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import argparse def command_line(): """Generate an Argument Parser object to control the command line options """ parser = argparse.ArgumentParser(description=__doc__) parser.add_argument("-w", "--webdir", dest="webdir", help="make page and plots in DIR", metavar="DIR", ...
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import re def strip_price(header_list): """input a list of tag-type values and return list of strings with surrounding html characters removed""" match_obs = [] regex = '\$(((\d+).\d+)|(\d+))' string_list = []#['' for item in range(len(header_list))] for item in range(len(header_list)): ...
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def minutes_to_restarttime(minutes) : """ converts an int meaning Minutes after midnight into a restartTime string understood by the bos command """ if minutes == -1 : return "never" pod = "am" if minutes > 12*60 : pod = "pm" minutes -= 12*60 time = "%d:%02d %s"...
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import re def Substitute_Percent(sentence): """ Substitutes percents with special token """ sentence = re.sub(r'''(?<![^\s"'[(])[+-]?[.,;]?(\d+[.,;']?)+%(?![^\s.,;!?'")\]])''', ' @percent@ ', sentence) return sentence
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def replace_cipd_revision(file_path, old_revision, new_revision): """Replaces cipd revision strings in file. Args: file_path: Path to file. old_revision: Old cipd revision to be replaced. new_revision: New cipd revision to use as replacement. Returns: Number of replaced occurrences. Raises: ...
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import getpass def espa_login() -> str: """ Get ESPA password using command-line input :return: """ return getpass.getpass("Enter ESPA password: ")
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def escape_cdata(cdata): """Escape a string for an XML CDATA section""" return cdata.replace(']]>', ']]>]]&gt;<![CDATA[')
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def _strip_unbalanced_punctuation(text, is_open_char, is_close_char): """Remove unbalanced punctuation (e.g parentheses or quotes) from text. Removes each opening punctuation character for which it can't find corresponding closing character, and vice versa. It can only handle one type of punctuation ...
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def get_min_max_value(dfg): """ Gets min and max value assigned to edges in DFG graph Parameters ----------- dfg Directly follows graph Returns ----------- min_value Minimum value in directly follows graph max_value Maximum value in directly follows grap...
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import time def fmt_time(timestamp): """Return ISO formatted time from seconds from epoch.""" if timestamp: return time.strftime('%Y-%m-%dT%H:%M:%S', time.localtime(timestamp)) else: return '-'
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from typing import Tuple def break_word_by_trailing_integer(pname_fid: str) -> Tuple[str, str]: """ Splits a word that has a value that is an integer Parameters ---------- pname_fid : str the DVPRELx term (e.g., A(11), NSM(5)) Returns ------- word : str the value not ...
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def get_data_shape(X_train, X_test, X_val=None): """ Creates, updates and returns data_dict containing metadata of the dataset """ # Creates data_dict data_dict = {} # Updates data_dict with lenght of training, test, validation sets train_len = len(X_train) test_len = len(X_test) d...
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def _get_unique_barcode_ids(pb_index, isoseq_mode=False): """ Get a list of sorted, unique fw/rev barcode indices from an index object. """ bc_sel = (pb_index.bcForward != -1) & (pb_index.bcReverse != -1) bcFw = pb_index.bcForward[bc_sel] bcRev = pb_index.bcReverse[bc_sel] bc_ids = sorted(li...
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import time def local_timezone(): """ Returns: (str): Name of current local timezone """ try: return time.tzname[0] except (IndexError, TypeError): return ""
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import getpass def ask_credentials(): """Interactive function asking the user for ASF credentials :return: tuple of username and password :rtype: tuple """ # SciHub account details (will be asked by execution) print( " If you do not have a ASF/NASA Earthdata user account" " g...
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def rule_valid_histone_target(attr): """ { "applies" : ["ChIP-Seq", "experiment_target_histone"], "description" : "'experiment_target_histone' attributes must be 'NA' only for ChIP-Seq Input" } """ histone = attr.get('experiment_target_histone', [''])[0] if attr.get('experiment_type', [""])[0].lo...
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def split_exclude_string(people): """ Function to split a given text of persons' name who wants to exclude with comma separated for each name e.g. ``Konrad, Titipat`` """ people = people.replace('Mentor: ', '').replace('Lab-mates: ', '').replace('\r\n', ',').replace(';', ',') people_list = peop...
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def peek_with_kwargs(init, args=[], permissive=False): """ Make datatypes passing keyworded arguments to the constructor. This is a factory function; returns the actual `peek` routine. Arguments: init (callable): type constructor. args (iterable): arguments NOT to be keyworded; order...
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def initialise_halo_params(): """Initialise the basic parameters needed to simulate a forming Dark matter halo. Args: None Returns: G: gravitational constant. epsilon: softening parameter. limit: width of the simulated universe. radius: simulated radius of each particle ...
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def argMax(scores): """ Returns the key with the highest value. """ if len(scores) == 0: return None all = scores.items() values = [x[1] for x in all] maxIndex = values.index(max(values)) return all[maxIndex][0]
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def get_ratio(numerator, denominator): """Get ratio from numerator and denominator.""" return ( 0 if not denominator else round(float(numerator or 0) / float(denominator), 2) )
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def irrf(valor=0): """ -> Função para cálcular o valor do IRRF. :param valor: Valor base do salário para cálculo do IRRF. :return: Retorna o valor do IRRF e alíquota utilizada. """ irrf = [] if valor < 1903.99: irrf.append(0) irrf.append(0) elif va...
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import os def add_absname(file): """Prefix a file name with the working directory.""" work_dir = os.path.dirname(__file__) return os.path.join(work_dir, file)
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def dataset_labels(alldata, tag=None): """ Return label for axis of dataset Args: ds (DataSet): dataset tag (str): can be 'x', 'y' or 'z' """ if tag == 'x': d = alldata.default_parameter_array() return d.set_arrays[0].label if tag == 'y': d = alldata.default_...
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def max_sequence(arr): """ The maximum sum subarray problem consists in finding the maximum sum of a contiguous subsequence in an array or list of integers. :param arr: an array or list of integers. :return: the maximum value found within the subarray. """ best = 0 for x in range(len(arr...
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def get_reddit_slug(permalink): """ Get the reddit slug from a submission permalink, with '_' replaced by '-' Args: permalink (str): reddit submission permalink Returns: str: the reddit slug for a submission """ return list(filter(None, permalink.split("/")))[-1].replace("_", "...
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