Lal Claude Opus 4.6 commited on
Commit
6b6d749
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1 Parent(s): a9227e1

Fix YAML frontmatter and variable name

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- Remove comment line from YAML frontmatter
- Fix variable name: ad -> adata
- Add shape info to summary

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

Files changed (1) hide show
  1. README.md +8 -6
README.md CHANGED
@@ -1,5 +1,4 @@
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  ---
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- # 1. Metadata Block
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  license: mit
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  task_categories:
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  - tabular-classification
@@ -14,10 +13,13 @@ size_categories:
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  # binary-atac-tutorial-data
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  ## Dataset Summary
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- This dataset contains binary accessibility values for 1154611 CREs in 222 cell types. The original source of this data is CATlas (https://decoder-genetics.wustl.edu/catlasv1/humanenhancer/data/cCRE_by_cell_type/). For more details, see https://decoder-genetics.wustl.edu/catlasv1/catlas_humanenhancer/#!/. This version of the dataset is used in gReLU tutorial 2 (https://github.com/Genentech/gReLU/blob/main/docs/tutorials/2_finetune.ipynb).
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  ## Dataset Structure
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  ### Data Fields
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  In `.obs`:
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@@ -33,8 +35,8 @@ In `.var`:
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  | `start` | int | Genomic start position (hg38) |
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  | `end` | int | Genomic end position (hg38) |
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  | `Class` | category | CRE class |
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-
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- `.X` is a binary accessibility matrix of shape (222 × 1154611) in Compressed Sparse Row format.
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  ## Usage
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@@ -47,5 +49,5 @@ file_path = hf_hub_download(
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  repo_type="dataset",
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  filename="data.h5ad"
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  )
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- ad = anndata.read_h5ad(file_path)
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- ```
 
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  ---
 
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  license: mit
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  task_categories:
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  - tabular-classification
 
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  # binary-atac-tutorial-data
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  ## Dataset Summary
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+ This dataset contains binary accessibility values for 1,154,611 CREs in 222 cell types. The original source of this data is CATlas (https://decoder-genetics.wustl.edu/catlasv1/humanenhancer/data/cCRE_by_cell_type/). For more details, see https://decoder-genetics.wustl.edu/catlasv1/catlas_humanenhancer/#!/. This version of the dataset is used in gReLU tutorial 2 (https://github.com/Genentech/gReLU/blob/main/docs/tutorials/2_finetune.ipynb).
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  ## Dataset Structure
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+ - **Shape:** 222 cell types × 1,154,611 CREs
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+ - **Genome build:** hg38
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+
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  ### Data Fields
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  In `.obs`:
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  | `start` | int | Genomic start position (hg38) |
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  | `end` | int | Genomic end position (hg38) |
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  | `Class` | category | CRE class |
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+
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+ `.X` is a binary accessibility matrix of shape (222 × 1,154,611) in Compressed Sparse Row format.
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  ## Usage
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  repo_type="dataset",
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  filename="data.h5ad"
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  )
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+ adata = anndata.read_h5ad(file_path)
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+ ```