Lal Claude Opus 4.6 commited on
Commit ·
6b6d749
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Parent(s): a9227e1
Fix YAML frontmatter and variable name
Browse files- Remove comment line from YAML frontmatter
- Fix variable name: ad -> adata
- Add shape info to summary
Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
README.md
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---
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# 1. Metadata Block
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license: mit
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task_categories:
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- tabular-classification
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# binary-atac-tutorial-data
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## Dataset Summary
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This dataset contains binary accessibility values for
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## Dataset Structure
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### Data Fields
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In `.obs`:
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| `start` | int | Genomic start position (hg38) |
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| `end` | int | Genomic end position (hg38) |
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| `Class` | category | CRE class |
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`.X` is a binary accessibility matrix of shape (222 ×
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## Usage
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repo_type="dataset",
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filename="data.h5ad"
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)
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```
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---
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license: mit
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task_categories:
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- tabular-classification
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# binary-atac-tutorial-data
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## Dataset Summary
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This dataset contains binary accessibility values for 1,154,611 CREs in 222 cell types. The original source of this data is CATlas (https://decoder-genetics.wustl.edu/catlasv1/humanenhancer/data/cCRE_by_cell_type/). For more details, see https://decoder-genetics.wustl.edu/catlasv1/catlas_humanenhancer/#!/. This version of the dataset is used in gReLU tutorial 2 (https://github.com/Genentech/gReLU/blob/main/docs/tutorials/2_finetune.ipynb).
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## Dataset Structure
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- **Shape:** 222 cell types × 1,154,611 CREs
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- **Genome build:** hg38
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### Data Fields
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In `.obs`:
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| `start` | int | Genomic start position (hg38) |
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| `end` | int | Genomic end position (hg38) |
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| `Class` | category | CRE class |
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`.X` is a binary accessibility matrix of shape (222 × 1,154,611) in Compressed Sparse Row format.
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## Usage
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repo_type="dataset",
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filename="data.h5ad"
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)
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adata = anndata.read_h5ad(file_path)
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```
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